Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00992 ATGGCACCAAGATACAGTCGTGGAAAGGCCAAGGGAGAGAAGAAGAAGAAGGAAGAGAAGGTTCTTCCTGTTGTCATGGATATCACAGTGAACCTTCCAGATGAAACTAGTGTTGTTCTCAAGGGAATATCAACGGATAGAATAATAGATGTTCGTCGGCTTTTATCGGTGAATACAGAAACATGTTACATCACCAACTTTTCACTATCACATGAGATAAGAGGTGTACGTTTGAAGGACACGGTGGACGTGTCCGCACTGAAGCCATGCCTCCTCACTTTAGTTGAAGAGGATTACGATAACCATGGAGCGGTGGCTCACGTGCGAAGACTACTGGATATCGTAGCCTGCACCACCAGCTTCGGTCCGTCGTCTCCGCCGAAGAATGCGGCGAAGTCGAACAAATCTCAACCGCCTCCGGAGAAGCAATCACCGAAAGACGCTGCCACGGCGGATGGAGACGGAGAGATAAGCCACTCGTGCCCTAAGCTCGAGAGTTTCTATGAGTTTTTCTCTCTCTCACATCTCACTGCACCTCTTCAATATGTGAAGAAAGCTTCGAAGCGACATGTGGATGAGATATCGGAGGAGGATCATCTCTTCTCGCTTGATGTGAAGGTTTGTAATGGGAAAGTGGTGCACGTTGAGGCTTGCCGAAAGGGGTTTTACAGTGTTGGGAGGCAGAGGATTCTGTGTCATAATCTCGTTGATTTGTTGAGACAGATTAGCAGAGCTTTTGACAATGCTTATGATGATCTCTTGAAGGCATTTTCAGAACGTAACAAGTTTGGAAATCTCCCCTATGGCTTCCGATCCAATACGTGGCTTGTTCCTCCTGTTGCAGCACAATCACCATCATTTTTTCCTCCTCTTCCAGTGGAGGATGAAAATTGGGGAGGAAATGGTGGTGGCCTCGGAAGAGATGGAGAGTATGATTTGATTCCTTGGGCCAATAAGTTTTCTTTTATTGCATCTATGCCCTGCAAGACAGCAGAAGAAAGGCAAGCCCGTGATCGAAAAGCATTTCTTCTGCATAGCTTGTTTGTTGATGTTGCCATTTTCAAAGCAATTAAGGCTGTTAAACATGTTTTGGAAGAGCCCGGTTATTGCTCAGTAGCAGAAAATGATATTTACAGCGAGAGAGTAGGTGACTTGAGTGTTAGAGTCTTGAAAGATGGTTCTGTTGCAAGCTGTAAGATTGATTCCAAAATTGATGGAGTTGAAGCTACAGGAGTAAATCAAAAGGATCTAGTCAAACGGAATTTACTGAAAGGGATAACTGCAGATGAAAATACTGCGGCCCATGATACTACCACTTTAGGTGTTGTTTATGTAAGATACTGCGGTTATGTGGTTGTTGTGAAAGTTGAAGGCGAAGTTGATGAAAAAGTCAATGCTTTATCTCATCAAAATAATGAATTGTTTGATCAGCCAGAGGGTGGTGCCAATGCACTAAATATTAACAGTTTAAGATTTCTTCTTCACACGACAGCTCTACCGGAGAACAATAAACAGATGACTGAGATACAATTGTTTGAGACTGAAGAGCTTGGTGGTGGTACAGACACTTTTGTGGAAAATCTGATTAAAAAAAGCCTTGCTAAGCTTGAGGAAGAGGAACTGAGTTCGGACTATTTTGTAAGATGGGAACTAGGTGCGTGCTGGGTACAACATTTGCAAGACCAAAACAATACAGAAAAAGATAAGAAAACATCGTTGGAGAAGTCTAACAATGAAATGAAGGTTGAGGGTCTTGGGAAACCCCTCAAAGCCCTCAAGAATAATAAAAAGAAATCTGATTCAAGCAACCCTAATTTTGCATCTGAACATTCTAAATCTAATCCCGAGGCTGAAAATGCTGCATTGTCCTCAAGTGAATCCCAACATGAAACTGCGGCAGCTGAGAATGAGCTTGTGCTGAAACGGATGTTATCTGAGGCAGCTTTTACCCGATTGAAAGAATCAGGAACTGGACTTCACTGCAAGTCTATTCAAGATTTGATCGACTTATCTCAGAAATATTACATGGATGTTGCTATCCCCAAACTGGTAGCAGATTTTGGCTCATTGGAACTCTCTCCAGTTGATGGTCGCACGCTAACTGATTTTATGCATACTAGGGGTCTACGAATGCGATCTCTTGGGCATGTTGTCAAGCTTTCTGAAAAACTTTCACACGTGCAATCGCTTTGCATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCTTGAGGGCAGTGATTTCTGCTGTTGTTGACAAGGAGAAAATGGCTTCATCAATAGCTGGTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAGAGAAACAGATCAATCGTGTGATGTCCACCCTCTTGTGTGGAATTGGCTAAAGTTGTTTTTGAAGAAACGGTTTGACTGGGATCTTAACAGGTTGAACTATAAAGATGTGAGGAAATTTGCAATTCTACGTGGCTTGTGTCACAAGGTGGGAATTGAGCTCGTTCCAAGAGATTTTGACATGGATTCTCCATTTCCCTTCCAAAAAACTGATATTGTTAGCTTGGTCGCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTCCTGGAGTCCTCCAAAACAGCTTTAGACAAGGGAAAGCTTGAAGATGCTGTTACCTATGGAACAAAGGCTCTTGCAAAGCTTGTAGCAGTTTGTGGTCCCTACCATCGAATGACAGCAGGAGCATACAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACTATTTATCAACAAAAAGCTTTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACAGAGCTGGCTCTTAAATATGTGAAGCGTGCTTTATACCTTTTGCATCTGACATGTGGCCCTTCTCATCCAAATACTGCCGCAACTTACATTAATGTGGCTATGATGGAGGAAGGTCTGGGAAATGTACACATTGCTCTCAGATATCTTCACAAAGCATTAAAGTGCAACCAAAAGTTACTTGGTGCAGATCATATTCAGACGGCTGCAAGTTACCATGCAATAGCAATAGCACTCTCGTTGATGGAAGCATATCCATTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCTGATGACTTGCGAACACAGGATGCTGCAGCTTGGCTTGAGTATTTTGAGTCCAAGGCATTTGAACAGCAAGAAGCTGCTCGAAATGGCACGAGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTAAGTGTGTCGGATCTTCTTGACTACATTAATCCTAATCATGATACCAAAGGGAGAGATGCAGCAGCAAAGAGAAGAAACCAGGTGCGAGCAATATCCTACCAGAACAATGTCTCAGTAAGTTCTGACGAGTCTTCAAAAGAAATCCAAAAAGAGGCTTCAGATGAAGAGCTACTTATACCTGAAACAGGAGGTAGTGCAGATTCTGAGAATGAGAGCAACTCGGCACCTGATCCAGAACCACCGATTTTAGAAAAGATCTCGGACGAAAAGCCACAAACTTCTAATGAGTTATTGTCTGAAGTTTATCCTGATGGAGATGATGGATGGCAATCAGTTCAAAGACCAAGATCAGCTGGCTCATATGGGCGGCGAGTGAAACAAAGACGTGCAACACTTGGCAAAGTTTATAGTTACCAGAAGAATGTGGAAGTTGGCACTGAACAACATCCTTCGGTAAAGAGTGCTAATCAGAATAGTAAGTATTATTTCTTGAAGAAGCGGACAATACACCATGGGGGTTATGCAGATAATCGTGCTGTGAACATCAGCCAAGGTACTAAGTTTGGAAGAAAAGCAGTCAAGGCTGTTGCATACAGGGTCAAGTCTACGCCATCTGCTTCGAAGACCGTTGTAAATGAGACACCAGAAATTGGTGACAAAGAACCTGATTCAATTGATGTTAATCCAGTTAAGACTTCTATAGTCAGTCTTGGTAAAAGTCCTTCATACAAGGAAGTAGCCTTGGCTCCTCCTGGGACAATCTCCAAGTTGCAGGTCTATAATCCTCAAAGTGAGATTTCTATTAGTCATGAACATGATGTTGGAAAACACAAAGAGGAAGACAACGAAACTCGTAGAAACATCAATCCAACCCCAAAAGAGGCAAATAATGTGTTTAAAGAGAAGTCTGATGATTCTTTGTCTGATTCGATAGAAAATTCACAAGATGACACTGTAGTTTCTACTGAGAAGAAAGAAGAAACTCAGTTAAACAAAGTTGTTCAAGATAATTGTGTGACTTCTGAGAGGCTTGAATTTGGGGACGTTGAAGCACAAGGAGCTGTTGATAACAGCATAGTGATTGATGCAGTAGAGAATGTTGTGGACTCCTACAAACAAGAACTTATTGCAAGTAATTTGCCTTGCAGTCTTGAACCATCTGATAATATAAATTCTAGTCCACGTGGTAGTGAGGATTTAGGCATCAATTTATTATCACCTAGTCAGAGTCAAGCTGGGGGCATCTCCTATAAGAAATTGTCTGCATCAGCAGCGCCATTCAACCCATCACCCGCCATTGCACGTGCTGCACCTATTGCCATGAATATGACTCATCCTTCTGGCCCCGGTCCTGTTCCAGCTATTGGCCCCTGGCCAGTAAACATGAATGTTCACCCTGGACCTGCTACTGTGCTACCTGCTGTTAACCCTATGTGTTCCTCTCCTCACCATGCATATCCATCACCTCCAACAACACCAAACATGATGCAGCCATTGCCATTCATGTACCCTCCTTATACTCAACCTCAATCAGTACAAACCAGCAGTGCTTTTCATGCCAATCATTTTACATGGCAGTGTAATTTGAACCCCGTCATATCTAAGTTTGGTCCTGGTGCTGTTTGGACTGGTTGTCATCCTGTGGAATTTCCTCGTCCAGTACCTATTGTTGAATCAATCCCTGATATCATTTCTGAGCCACAAGTGCAGTCTTATACAGCTGAAAGTCCAAGTTCAGCTTCAGTTCTGCTTGAGGATATTGATAAGGCTGGGGATTCTAATAAAGAGGTAAAAACGTCAGCATTGGAGATGAATGAAGATGGAACGGTGAGAGTTGGTTCAGAAAGTATAAAAGATGGTAATCTAAATTTTCCCGGGACAAACAATGCTGTGAACGAACCAAATCAAAATGTTGGCTCGAACAGCAGCACTAACAGTAGTGAAATGAACATGGATGATGAGAAAACGTTTAGCATTTTGATTCGTGGAAGAAGAAACCGAAAGCAGACTCTGAGAATGCCTATAAGTTTGCTTACCCGACCCCATGGCTCTCAGTCATTTAAGGTTATTTATAACCGTGTAGTTAGAGGAAATGATTCTTCAAGGTCCATCAATTTCTCTTCTAATAAACATTGCACAGCTTCTGCTTAA 5481 0.426 MAPRYSRGKAKGEKKKKEEKVLPVVMDITVNLPDETSVVLKGISTDRIIDVRRLLSVNTETCYITNFSLSHEIRGVRLKDTVDVSALKPCLLTLVEEDYDNHGAVAHVRRLLDIVACTTSFGPSSPPKNAAKSNKSQPPPEKQSPKDAATADGDGEISHSCPKLESFYEFFSLSHLTAPLQYVKKASKRHVDEISEEDHLFSLDVKVCNGKVVHVEACRKGFYSVGRQRILCHNLVDLLRQISRAFDNAYDDLLKAFSERNKFGNLPYGFRSNTWLVPPVAAQSPSFFPPLPVEDENWGGNGGGLGRDGEYDLIPWANKFSFIASMPCKTAEERQARDRKAFLLHSLFVDVAIFKAIKAVKHVLEEPGYCSVAENDIYSERVGDLSVRVLKDGSVASCKIDSKIDGVEATGVNQKDLVKRNLLKGITADENTAAHDTTTLGVVYVRYCGYVVVVKVEGEVDEKVNALSHQNNELFDQPEGGANALNINSLRFLLHTTALPENNKQMTEIQLFETEELGGGTDTFVENLIKKSLAKLEEEELSSDYFVRWELGACWVQHLQDQNNTEKDKKTSLEKSNNEMKVEGLGKPLKALKNNKKKSDSSNPNFASEHSKSNPEAENAALSSSESQHETAAAENELVLKRMLSEAAFTRLKESGTGLHCKSIQDLIDLSQKYYMDVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVVDKEKMASSIAGALNLLLGVPENRETDQSCDVHPLVWNWLKLFLKKRFDWDLNRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPFPFQKTDIVSLVAVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHIALRYLHKALKCNQKLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAAAKRRNQVRAISYQNNVSVSSDESSKEIQKEASDEELLIPETGGSADSENESNSAPDPEPPILEKISDEKPQTSNELLSEVYPDGDDGWQSVQRPRSAGSYGRRVKQRRATLGKVYSYQKNVEVGTEQHPSVKSANQNSKYYFLKKRTIHHGGYADNRAVNISQGTKFGRKAVKAVAYRVKSTPSASKTVVNETPEIGDKEPDSIDVNPVKTSIVSLGKSPSYKEVALAPPGTISKLQVYNPQSEISISHEHDVGKHKEEDNETRRNINPTPKEANNVFKEKSDDSLSDSIENSQDDTVVSTEKKEETQLNKVVQDNCVTSERLEFGDVEAQGAVDNSIVIDAVENVVDSYKQELIASNLPCSLEPSDNINSSPRGSEDLGINLLSPSQSQAGGISYKKLSASAAPFNPSPAIARAAPIAMNMTHPSGPGPVPAIGPWPVNMNVHPGPATVLPAVNPMCSSPHHAYPSPPTTPNMMQPLPFMYPPYTQPQSVQTSSAFHANHFTWQCNLNPVISKFGPGAVWTGCHPVEFPRPVPIVESIPDIISEPQVQSYTAESPSSASVLLEDIDKAGDSNKEVKTSALEMNEDGTVRVGSESIKDGNLNFPGTNNAVNEPNQNVGSNSSTNSSEMNMDDEKTFSILIRGRRNRKQTLRMPISLLTRPHGSQSFKVIYNRVVRGNDSSRSINFSSNKHCTASA 1826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00992 1826 Coils Coil 1823 1826 - -
Trre15g00992 1826 ProSiteProfiles TPR repeat profile. 905 938 IPR019734 GO:0005515
Trre15g00992 1826 ProSiteProfiles Clueless (Clu) domain profile. 294 570 IPR025697 -
Trre15g00992 1826 Coils Coil 556 576 - -
Trre15g00992 1826 MobiDBLite consensus disorder prediction 122 143 - -
Trre15g00992 1826 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 860 1110 - -
Trre15g00992 1826 Pfam Tetratricopeptide repeat 904 974 - -
Trre15g00992 1826 Pfam Tetratricopeptide repeat 988 1062 - -
Trre15g00992 1826 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 11 1436 IPR027523 GO:0006996
Trre15g00992 1826 SMART tpr_5 905 938 IPR019734 GO:0005515
Trre15g00992 1826 SMART tpr_5 947 980 IPR019734 GO:0005515
Trre15g00992 1826 SMART tpr_5 989 1022 IPR019734 GO:0005515
Trre15g00992 1826 MobiDBLite consensus disorder prediction 562 634 - -
Trre15g00992 1826 MobiDBLite consensus disorder prediction 1142 1236 - -
Trre15g00992 1826 MobiDBLite consensus disorder prediction 1379 1398 - -
Trre15g00992 1826 SUPERFAMILY Hypothetical protein c14orf129, hspc210 173 262 IPR023231 -
Trre15g00992 1826 MobiDBLite consensus disorder prediction 122 157 - -
Trre15g00992 1826 Gene3D Tetratricopeptide repeat domain 864 978 IPR011990 GO:0005515
Trre15g00992 1826 Gene3D Tetratricopeptide repeat domain 979 1099 IPR011990 GO:0005515
Trre15g00992 1826 MobiDBLite consensus disorder prediction 562 581 - -
Trre15g00992 1826 CDD CLU-central 694 835 IPR033646 -
Trre15g00992 1826 Pfam Mitochondrial function, CLU-N-term 45 115 IPR028275 -
Trre15g00992 1826 SUPERFAMILY TPR-like 942 1069 IPR011990 GO:0005515
Trre15g00992 1826 MobiDBLite consensus disorder prediction 598 632 - -
Trre15g00992 1826 SUPERFAMILY TPR-like 871 976 IPR011990 GO:0005515
Trre15g00992 1826 MobiDBLite consensus disorder prediction 1375 1437 - -
Trre15g00992 1826 Pfam Translation initiation factor eIF3 subunit 135 692 834 IPR033646 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00992 Trre-Chr15 7766885 7781169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00992 K03255 - gmx:100808136 2773.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00992 15 7766885 7781169 Trre15g00992 15 7766885 7781169 ECH