Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00972 ATGAAACCAGACATAGAAACAGATGCAACAACAACCTCATCATCGTGTCTTCAAAACATCATAGATCATCATCTTCCTCTTCGTCTTCTCAGATCCGACATAGTAACACCTGCTCCTACTTTCTCCAATTCCACAATCGATTTTCTTCCTCACTTTGCAGGTTACTCATGGATCGCTTATGGAGCTTCTTCAATTCTCACCATTACCCATTTCCCTTCTCCTCTTTCATCTCATCAAACTCGCATCGGTCCCATTTTTCGTCAATTCTTTGAACTCTCCGACCATCATTCTCATCCTGTTTCCTCTGTTTCTTGGTCCCCCCAAATTCCTTCTTCTGGTTATCTTGCTGCTTCTGCTCAAAATTCTATCTGGGTTTTTCACCATGATTCTCTTGCGTCTAAAGGTTCTTTTTGTTGGAGTCAGAATGCAGTGCTTGTACAACGTACAAAAGTGGAGACCATCAGATGGACAGAATCAGGGGATGGAATTATTTCTGGTGGAAGGGAGGTAGTTTTCTGGAAAAAGAGTAACAGATGTTGGGAAATTGCGTGGAAGTTTAATGCAGATCAACCACAAACACTCGTGAGTGCAACCTGGTCTATTCGTGGCCCTTCAGCAACTGCAGCACGTCCTAGTAAAGAACAGATTGAAGGGTCGTTAATCAGTCAGGGAAGCAAATGTGTGTTAGTATGTCAAAGCAATGGACCCTCTGAATATTCAAAAGTCAAACTACAGCATCCTTTACCTATTGTGATGATTCAATGGAGACCATCGAGTGGAAAACTATCAAACCGATATGGTAGGTATTCAAAAAGGAATGTGTTACTGACCTGCTGCTTAGACGGAACTGCAAGGTTATGGAGTGAGATTGATAATGGAAAGGCCAAGAGGGGTGGGAAGAACACGGGGTGCTCTTTTTGTGTTGTTGCTGTTATTGAGATTAATCAGTGTTTAAATGGAACTCTTGGTTCAGATATATTTGTGACATGGGGGACAGAAATTGAGGGGTTAGTTAGAAGAGGTGAAGGAGACAAACTGAATTTTTCGAAAGAAGGATTTGAGCATGATGTTAGAAAATGTGACTGGTTAGTTGCATTTGGTCCTGGATTGTTACTTAGCTTTTGGGCTGTCCACTGTCTTGACGATGTTTCCCCACTGAGATTCCCCCGAGTTACATTATGGAGGAAACATGAAATCCAAAGCCACGACTTAGGAAACATCTATAAGTTTGACTCGTCTGATTTTAAAAACGCATTGCTTCTTCATAAAGTCATTATATCAAGAAATTCGTTGTCTGGTCCACCGATTATATGCTCACCACTTCAGCTTTTACCTTGTAATTCCTTAGTTTGGTCATTTTTCAATTTTCAAGAAATACATGATACTGTTGAGGGCTCCCTTGATAATGGTAAAACAGATAAAATCTCCTCCCATTTGACTGGTGGGTCATTAAACCTAGATGGACATAGTGAGAAAATATTAAAGGTTTCCATTCATCCTTATACTTCCGAAGCTCAAGTTGCTGCTTCTCTTGATTCTAATGGACTGCTTCTTTTTTGGTCACTTTCTAATATTTCAAACTCTATTTTGGGATGTCCAACGTTGGTCCCTACTTGGGAACTCTGTGGAAAGCTTGCAACTCAACACTCATGCTCCATGTATACTAGCTTGACATGGGCACCTTCAATATTTGATGAGCAACTGGTATTTTTTATGGGACATACCAGGGGGGTCGATTGCTTCATAGTCAATATAAGTCGAACTGAAGAAGAAAACATGGAATGTCACTACTTATGCACTATTCCCTTCACTGGTCATGGTCCTTATGAGGATGGCCCACATGATATATTTGCAATTCCTTTGAACTCAACTTGTAATAAAACATTTCGTAACAATAAACTTATGCTATTGGCTATTTGGGCGGGGAGATTTCAGGCCCTATCCTGGGAAGTTAACTTGCACTCTTTTGACATGTCAACAAGCTGTTGTGAATGCAACTTTGATGCTAAAAGCCTTGATGAAAACAGCGTTTGGGCATTTGAAAGTACATTTGCCAGTAAAAGATATTGCATTACTGTAATTCCATGTTCATCCAAGTTTCCGAATTCCAATGATCTGGTTACTAGTTTTGCAGTGGCGGATCCAGGCACCCTGAGTCACAACCAAGAGTTTGGCTTTGCTAATGATCTTTGTAGTAGCTGTCCTACATATATCATGGCCACAGGCTGCTCTGATGGTAGCTTGAAACTTTGGAAAACTAACCGTGGCAATCCGTTGACCCTGCACTTGCCATGGGAGCTTGTGGGTATGTTTATTGCTCATAATGGTCCTGTTAAGGGTATATGTTTTACTGATTGTGGTCAGAAAGTTGCTACGTTCTGCATTGAAAATGATTCAAGTGTTGTCAATACCATCCATATATGGGATACTGTAAATCTGATCACTGCAGGGACTTTTATTTTAGAAGATACGCTGATGGTTGAAAGCAATGTTATTACTCTCAAGTGGCTAAATTTAGGAACTGGTGAGTTATTGCTTGGAGTTTGTTTGCAAAATGAATTGCAAGTATATGCTCGGAAACGTTATGACGGTCTGACATGGTCAAACTCAGTAAATTTTCCAAAATCAAATGTATGGTCTCACATTGCATTTGCTCGCACTTCCCTTCCAATAAATGATTTCTTATGGGGACCCAGAGCTGCTGCAGTGGTAGTTCATGGAAACTACTTCAGTATATTTAGTCATTGGTTGTTCCATGTGGATAAAATGCAAAAGGATAATTTTCGTTCTCGTAACTCAGATCCAAGAGCCTGTAATTGCAAGGGTGAAACATATGAAGACATAAGTTCTGCAATTTTTACTGATTCTGACATTAGTGCTTCCGGAGAGCTTTCAATTGGAGACAGTCGTGCAGATTGTGATTCTAAGCTGTCCATCATAAATAATGTGAAGGACAATAACCTATACGGTAGCTTGTTTCTTGCCAAGGAACAATTAAAATATGAACTTCGTAGCAAGGTTGGTTTGTGGAGCATCTTAGAAGTAGCTGAGCTGATCAGTGGATCTTTGCCTACTTATCACCCTAATGTACTTCTTACCAATATAAGTTCAGGCAACTGGAAACGTGCTTATGTAGCTGTTAAACATCTTGTTGAATGCCTCATTTCTAATTATGATCCTAAAAAGGCAGAGATCAGCAAAAGTAATGGTCTTCCAAGTATTGTATTGTCAGATTATCTAGAAGGCCGTACGCCAAAAAGTTCCCAAGATAAAGGGTTCAATTGGAGTGGGGATGTTTCTTCAATTGCATCATTTTCACTGGCTCAAAGTAGCTCGATCCAGTTTCCATATCATTCTGATTCCGGTGCTGAAAATAAAAGCAGTTCCACCTCAACTAGATCTGAGCTTATTGGCTTTATTCAATCTTTAGAGAAATTTCCTGATTTAGCATGTTTGACCAACATAGAAAGGACAGAGATTCTCTCGATCATTGATCTGCTCAGTGAAGTTAGTAATCTAGACTCATCTTCTGCATATCAAAGTCTTGATGAACCTGGGCGAAGGTTTTGGGTTGCACTAAGGTTTCAGCAACTACTTTTTCAAAGAAAGTTTGGTAGAGCTGGATCTGTCGAAGAGATGTTCATTAATTCAAGGTTGTTCGTGTGGGCTTATCACTCTGATTCTGTAGAAAACTTATTTGGTTCTGTCATACCCAATGAACCATCGTGGCAAGAAATGCGTGCTTTGGGTATGGGCTTTTGGTATGCTAGCATACCTCAATTACGCGCAAGGATGGAGAAATTAGCAAGAGCACAGTATTTGAAGAACAAAAATCCTAAGGATTGTGCATTGCTATATATTGCATTGAACAGAATTCAAGTTTTAGCTGGCCTTTTTAAAATCAGTAGGGATGAGAAGGACAAGCCTTTAGTGGCTTTTCTTGCGCGCAATTTTCAGGATGAGAAAAACAAAGGCGCTGCTTTAAAAAATGCTTATGTCTTATTGGGAAAACATCAGCTGGAATTGGCAGTTGCTTTCTTTTTGCTTGGAGGTGATCATTCTTCTGCCATAAATGTTTGTGCTAAGAACCTTGGGGACGAACAGCTTGCACTAGTCATTTGTCGCCTTGTTGAGGGCCATGGCGGACCATTAGAGCGTCACCTAATTACTAAGTATATATTTCCGTCTGCAATCGATAGAGGAGACTACTGGCTGGCTAGCCTTCTGGAGTGGGAAATGGGTAATTGCTATCAATCTTTTCATAGAATGCTAGAGTTTTCGGTAAACACTGTGGCTCCAGAGTCCACCATCAAGTCCAATTCTGGTTCTTTTCTGGACCCTACTGTTGGATTGTATTGTCAAATGCTTGCAACAAAGAATAGCACGCGAAATGCTGTAGGAGAGCAAAATTCTGCCGTTCTTTTAAGGTGGGCAACTTTGATGACAGTTACTGCCTTAAAAAGATGTGGTATTCCTCTTGAGGCATTGGAGTATTTCTCATCTTCACCGAGCATGCTTGGGACTGCAGATCAAGAGAATGAATTGAGCGATGTTCTGTCCAGTACATTAAAGCCTTTGCCAAGAAAATCCTCTAACTGGTTATCTGCTGATGTATCTATGCATCTGGAGTTTCATGTTAAATTGAATTTGGCACTTTGCTACTTATCGAAACTGATAAGAGAGCATCCAAGTTGGCCTGACACTTTTACAGAATCTGATGAAGAAGCCTCTTATTCTGAAGAGTACATGATTCAATACGAGAAATCAAATGATAGTTTTAAACAAAAGTTGCACGCAGGGTTTGATCTTTTCGAACAAAGGTTTTCACTGACTCCGCACTATCTAATCAGCATGATCTTACTCTTGCTTTGTCATCATGGACTATGGTACATTGGGTATGATGTGACCGATGGGAGCACTCAAGGAGAACAGTTTCAAAAGCAGAGGGATAGATTTGATATTTCCAATTTATCTCATTCTCAGTTGTTCAAATCCCTCTTTAAAACTGCAGAAGAAATTTCCTTTTTGTATTCAAGATTTTTTTCTGCCTGCGGTATGGAATATTCTCAACAAAGTTCAGCTCTTGAGAAAGATGCTTTACAGTGTCACTTTGAAGCTTGGCTTCGAAGAAACTCAGAAGCCCTTTTATTTATGGTGCAACCTTTCTTGATTGCACATGATGGTTCCAATCCTTATGAGGTTGATATGGTGAATCTGAAGAAGCTTATCCCTAAAGTTGCGCAGTTGTTGGCTCAAAATTCTTTCATAACTAATATAGAAAACCTTCATGTATCCAAATGTGCAGAGGATAAACCAGGCGCAGATATAAAGTGTCCAGTTCCTGATGATGAAAGATGGAAGATTTTAGGGACCTGCTTGTGGCAGCATATGTCTAGATTTATGATATCTAACTTGAATTTGGTTCTTGCTAAACTTGAAGATGAAAATTTATCTGGTTCTTTCCACAGATATAGGGAATCTAATACTCCTAGCAATATGAATCATTCTCCTAGAAATATGGATTTTGATAGCATCGACTTGCCAGAGCAAATTCTATTAGTCACATTTAGCTTATGTGATTTACTGACGACAACAGTTACTCACATTTCTTCTTATCATGTTAAACAACTTGCGCAATTTTTGTGGCAGAAATTGGAGAATGATTCAAATGCTATGACTCTTGAATGGTTAAAACAAACAAGTCAATCAGAACCCAATCAGCATGAAGTCCTGGATTTTTTGGAATTGATGAACCGGAAAGATAACTCTGTAGTTCATCAGTTGTTATGGGATCACTGTGCTAATCCCAAATTGATACGTGACTGCTTTGCACAGGAAAAACTCAATTGGTCAAAGGATTTGGACCAAAAGCCTACTAAAGGGTGGAATGACCTGTATACAATTATGACAGGATTGTCTAAAACTGACGATTCACATGATGATAAAGTTAGCAACATACCTGCTAATCATGAAGTAGGATCTCCAGTTAAAGGAACATTTTTAAGTGGCCATTCTTCTAAAAGATCCAACCAGAAAGATATAATTTGTGCAAATATTGATGACTTTCAGAGTCCCAGAGAAGTTTACAAGAGAAATGGAGAACTTTTGGAGGCACTGTGTATTAACTCTACCAATCAACAGGAAGCTGCAGTTGCTAGCAACCGGAAGGGTATAGTATTCTTTCACTTGGAAGATGAGATTCCTTTTAGTGGCGCAGCAGACCTTTTGTGGACCAAGGCCGATTGGCCACAAAATGGATGGGCAGGTTCAGAATCCACCCCTGCTCCTACTTGTGTTTCTCCGGGGGTTGGCCTTGGGAGCAAGAAAGGGGCACACCTCGGTCTTGGTGGAGCAACTGTCGGTATGGATTCTTCAGCTTGGCCTAGCAGAGACTTGATAGGCGGTGGAGCATTAGGAATGCCAGGTAATACTGGTATTGGTGCCTCTGGATTAGGTTGGGAAACTCAACAAGACTTTGAAGATTTTGTCGATCCACTTGCCACTTTGGAGAATACAAGTACCAGGGCTTTTTCCAGTCATCCAATGAGGCCTTTCTTCTTGGTTGGTTCAAGCAATACACACATTTACTTGTGGGAGTTCAATAAAGACAAAGCTACTGCTACATATGGAGTGCTGCCTGCTGCCAATGTCCCTCCACCTTATGCTCTTGCGTCAATTTCAGCTTTACAATTCGACCATTTCGGTCACCGTTTTGCCAGTGCTGCATTAGATGGAACCGTCTGCACATGGCAGCTGGAGGTAGGAGGAAGGAGCAATGTTCGTCCAACAGAATCATCCCTCTGCTTTAATGGCCAAGCATCGGATGTCACGTACGTTTCCTCTAGTGGATCAATAATAGCTGTGGCTGGATATAGCTCTAATGGTATTAATGTGGTTATATGGGATACTTTAGCTCCACCGTCAACTTCTCGAGCTTCCATTTTATGTCATGAAGGAGGTGCGCGCTCCCTTTCAGTTTTTGACAATCAAGTAGGAAGTGGTTCTGTTTCCCCTCTTATTGTAACTGGTGGTAAAGACGGTGATGTTGGACTTCACGACTTCCGCTATATAGTTACTGGGAAGGCTAAAAGGCATAAGCGTTCTGATAGCATAGGTCAAAGCTCTCCCACATCTTTGAATTATGACAAGGATCATAATGTAGATGGGATGCTTTGGTATATTCCAAAGGCACACTCAGGGAGTGTCACAAAAATAGCTACAATCCCAAATACCAGCTTGTTTTTGACCGGAAGCACAGATGGAGATGTCAAGCTCTGGGATGTTGCGAGCTCGAAGTTAATACATCACTGGTCTAAGATACATGAAAAGCACACTTTTCTCCAGTCAGGCTCTCGTGGATTTGGTGGTGTTGTTCGGGCTGCTGTTACGGACATTCAAGTTGTTCCGCATGGTTTTCTTACATGCGGCGGGGATGGAAATGTAAAGCTTGTACAGTTGAAAAGTCACCTGCGTGGCTTCGGGGATGTGTAA 7491 0.4076 MKPDIETDATTTSSSCLQNIIDHHLPLRLLRSDIVTPAPTFSNSTIDFLPHFAGYSWIAYGASSILTITHFPSPLSSHQTRIGPIFRQFFELSDHHSHPVSSVSWSPQIPSSGYLAASAQNSIWVFHHDSLASKGSFCWSQNAVLVQRTKVETIRWTESGDGIISGGREVVFWKKSNRCWEIAWKFNADQPQTLVSATWSIRGPSATAARPSKEQIEGSLISQGSKCVLVCQSNGPSEYSKVKLQHPLPIVMIQWRPSSGKLSNRYGRYSKRNVLLTCCLDGTARLWSEIDNGKAKRGGKNTGCSFCVVAVIEINQCLNGTLGSDIFVTWGTEIEGLVRRGEGDKLNFSKEGFEHDVRKCDWLVAFGPGLLLSFWAVHCLDDVSPLRFPRVTLWRKHEIQSHDLGNIYKFDSSDFKNALLLHKVIISRNSLSGPPIICSPLQLLPCNSLVWSFFNFQEIHDTVEGSLDNGKTDKISSHLTGGSLNLDGHSEKILKVSIHPYTSEAQVAASLDSNGLLLFWSLSNISNSILGCPTLVPTWELCGKLATQHSCSMYTSLTWAPSIFDEQLVFFMGHTRGVDCFIVNISRTEEENMECHYLCTIPFTGHGPYEDGPHDIFAIPLNSTCNKTFRNNKLMLLAIWAGRFQALSWEVNLHSFDMSTSCCECNFDAKSLDENSVWAFESTFASKRYCITVIPCSSKFPNSNDLVTSFAVADPGTLSHNQEFGFANDLCSSCPTYIMATGCSDGSLKLWKTNRGNPLTLHLPWELVGMFIAHNGPVKGICFTDCGQKVATFCIENDSSVVNTIHIWDTVNLITAGTFILEDTLMVESNVITLKWLNLGTGELLLGVCLQNELQVYARKRYDGLTWSNSVNFPKSNVWSHIAFARTSLPINDFLWGPRAAAVVVHGNYFSIFSHWLFHVDKMQKDNFRSRNSDPRACNCKGETYEDISSAIFTDSDISASGELSIGDSRADCDSKLSIINNVKDNNLYGSLFLAKEQLKYELRSKVGLWSILEVAELISGSLPTYHPNVLLTNISSGNWKRAYVAVKHLVECLISNYDPKKAEISKSNGLPSIVLSDYLEGRTPKSSQDKGFNWSGDVSSIASFSLAQSSSIQFPYHSDSGAENKSSSTSTRSELIGFIQSLEKFPDLACLTNIERTEILSIIDLLSEVSNLDSSSAYQSLDEPGRRFWVALRFQQLLFQRKFGRAGSVEEMFINSRLFVWAYHSDSVENLFGSVIPNEPSWQEMRALGMGFWYASIPQLRARMEKLARAQYLKNKNPKDCALLYIALNRIQVLAGLFKISRDEKDKPLVAFLARNFQDEKNKGAALKNAYVLLGKHQLELAVAFFLLGGDHSSAINVCAKNLGDEQLALVICRLVEGHGGPLERHLITKYIFPSAIDRGDYWLASLLEWEMGNCYQSFHRMLEFSVNTVAPESTIKSNSGSFLDPTVGLYCQMLATKNSTRNAVGEQNSAVLLRWATLMTVTALKRCGIPLEALEYFSSSPSMLGTADQENELSDVLSSTLKPLPRKSSNWLSADVSMHLEFHVKLNLALCYLSKLIREHPSWPDTFTESDEEASYSEEYMIQYEKSNDSFKQKLHAGFDLFEQRFSLTPHYLISMILLLLCHHGLWYIGYDVTDGSTQGEQFQKQRDRFDISNLSHSQLFKSLFKTAEEISFLYSRFFSACGMEYSQQSSALEKDALQCHFEAWLRRNSEALLFMVQPFLIAHDGSNPYEVDMVNLKKLIPKVAQLLAQNSFITNIENLHVSKCAEDKPGADIKCPVPDDERWKILGTCLWQHMSRFMISNLNLVLAKLEDENLSGSFHRYRESNTPSNMNHSPRNMDFDSIDLPEQILLVTFSLCDLLTTTVTHISSYHVKQLAQFLWQKLENDSNAMTLEWLKQTSQSEPNQHEVLDFLELMNRKDNSVVHQLLWDHCANPKLIRDCFAQEKLNWSKDLDQKPTKGWNDLYTIMTGLSKTDDSHDDKVSNIPANHEVGSPVKGTFLSGHSSKRSNQKDIICANIDDFQSPREVYKRNGELLEALCINSTNQQEAAVASNRKGIVFFHLEDEIPFSGAADLLWTKADWPQNGWAGSESTPAPTCVSPGVGLGSKKGAHLGLGGATVGMDSSAWPSRDLIGGGALGMPGNTGIGASGLGWETQQDFEDFVDPLATLENTSTRAFSSHPMRPFFLVGSSNTHIYLWEFNKDKATATYGVLPAANVPPPYALASISALQFDHFGHRFASAALDGTVCTWQLEVGGRSNVRPTESSLCFNGQASDVTYVSSSGSIIAVAGYSSNGINVVIWDTLAPPSTSRASILCHEGGARSLSVFDNQVGSGSVSPLIVTGGKDGDVGLHDFRYIVTGKAKRHKRSDSIGQSSPTSLNYDKDHNVDGMLWYIPKAHSGSVTKIATIPNTSLFLTGSTDGDVKLWDVASSKLIHHWSKIHEKHTFLQSGSRGFGGVVRAAVTDIQVVPHGFLTCGGDGNVKLVQLKSHLRGFGDV 2496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00972 2496 Gene3D - 2388 2492 IPR015943 GO:0005515
Trre15g00972 2496 ProSiteProfiles Trp-Asp (WD) repeats profile. 2395 2436 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 2307 2353 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 2216 2251 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 2162 2199 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 237 288 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 85 127 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 2439 2485 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 472 521 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 2388 2427 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 764 809 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 693 752 IPR001680 GO:0005515
Trre15g00972 2496 SMART WD40_4 2262 2302 IPR001680 GO:0005515
Trre15g00972 2496 SUPERFAMILY WD40 repeat-like 2175 2483 IPR036322 GO:0005515
Trre15g00972 2496 Gene3D - 466 817 IPR015943 GO:0005515
Trre15g00972 2496 Pfam RAVE protein 1 C terminal 802 1495 IPR022033 -
Trre15g00972 2496 Pfam WD domain, G-beta repeat 2395 2427 IPR001680 GO:0005515
Trre15g00972 2496 SUPERFAMILY WD40 repeat-like 94 820 IPR036322 GO:0005515
Trre15g00972 2496 Gene3D - 72 312 IPR015943 GO:0005515
Trre15g00972 2496 PANTHER RABCONNECTIN-RELATED 31 2486 - -
Trre15g00972 2496 Gene3D - 2153 2385 IPR015943 GO:0005515
Trre15g00972 2496 FunFam Transducin family protein / WD-40 repeat family protein 2168 2445 - -
Trre15g00972 2496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 2395 2432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00972 Trre-Chr15 7558217 7572121 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00972 K24155 - gmx:100789935 3856.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00972 15 7558217 7572121 Trre15g00972 15 7558217 7572121 ECH