Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00968 ATGGGCATTGAAGATTCAACAATGACAGGTTTAACAGTGAAAACCCCACTTCAAATGCAATCATTTGGTATTTTCCTCCGTGAACCACCGCAAAATGAGGTCACCGACGACAGTAACCACCGCAACCCATCACCGGCGATGAAGAAAACCATCAAGAAGACACTGATCATGGATGAAACCTCATTAGAAAACCCTGATTTGGGTCCATTTCTTTTGAAGATGGCAAGAGATACCATAGCTTCTGGTGAAAATCCAGAAAAAGCTTTGGATTATGCAATTCGGGCATCCAAATGTTTTGAACGGGTTTCGGGTCCGGGTTTGGATCTTGCCACGTGTCTACATGTTGTTGCTGCAATTTATTGTAGTTTGGGGAATTTGGATGAGGCTATTGAGGAACTGGAGCGGTCTATTTTGTTGTTGGATGTTGAAAATGGGTCGGGTCATGCTATGGTGAAATTTTCTGGGTATATGCAACTAGGTGATACTTATTCTATTAGTGGACAATTGGATAGATCCATTTTGTGTTATGAGTCGGGTTTGAAGATCCAAATGGATATTTTGGGTAAATCTGACCCGAGAGTTGCAGAAACTTGCAGATACTTAGCTGAAGCACATGTTCAAGCCATGCAATTCGACGATGCAGAGCACTTCTGCAAGAAGACACTGGAAATTCATAGGGAGCATTGCTCACCCGCTTCTCTTACAGAAGCAGCCGACCGGCGTCTCATGGCTCTTATATGCGAAGCAAAGGGAGATTATGAACCAGCACTCGAGCACCTTGTCCTAGCCAGCATGTCAATGATTGCTAACGGACAAGATAATGAGGTTGCGGCTATTGATGTTAGCATTGGAGATATTTACTCCTCGCTGTGTCGTTTTGATGAAGCTGTTTTCGCCTATCAAAAAGCACTGACAGTGTTCAAATCTACCAAGGGTGAAAATCATAGTTCTGTGGCTTTAGTGTACATTCGACTCGCTGATCTTTACTACAAGACAGGAAAATTAAGAGAGTCGATATCCTATTGTGAAAACGCGTTAAGAATATACAGTAAACCTGTGTCTGGAATAACTGCCGGAGAGATTGCGAGTGGTTTGACTGAAATCTCTGCAATCTATGAAGCTCTAAACGAGCCCGAGGAAGCGCTGAAGCTCTTGCAGAAGGCGGTGAAACTATTGGAGGGTATCCCTGGACAATATAGGACAATTGCAGGAATAGAAGCTCAGATGGGAGTGATGTTCTACATGGTTGGTCGGCATGTGGATGCTTGGAAATCTTTTGACAATGCCGTCACCAAGCTGAGAGGCGGCGGGGAAAGGAAATCTGCGTTTTTTGGATTTGTGTTGAACCAGATGGGTTTAGCGTGCGTTCAACTGTATAAAATAGAAGAGGCTGCTACACATTTTGAAGAAGCTAGAGAGATATTGGAGAGGGAGTGTGGAACCTATCATTTGGACACTCTTGGTGTGTATAGCAACCTAGCTGCAACTTATGATGCATTAGGAAGAGTTGAAGATGCTATTCAAATATTGGAATACATACTCAAAATGAGAGAAGAAAAACTTGGAACTGCAAATCCGGACGTTGATGACGAAAAGAAAAGATTGTTTGAGCTTTTGAAAGAAGCGGGAAGAGTTCGTAGTAGAAGCGGAAAATCTCTTGAAAAGCTTATAGATTCAAACACCTTAAAGATGAAGAAAGAAGGAAGAAGGAGATGGGGTGCATTTGGTTTAAGAACATAA 1740 0.4264 MGIEDSTMTGLTVKTPLQMQSFGIFLREPPQNEVTDDSNHRNPSPAMKKTIKKTLIMDETSLENPDLGPFLLKMARDTIASGENPEKALDYAIRASKCFERVSGPGLDLATCLHVVAAIYCSLGNLDEAIEELERSILLLDVENGSGHAMVKFSGYMQLGDTYSISGQLDRSILCYESGLKIQMDILGKSDPRVAETCRYLAEAHVQAMQFDDAEHFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANGQDNEVAAIDVSIGDIYSSLCRFDEAVFAYQKALTVFKSTKGENHSSVALVYIRLADLYYKTGKLRESISYCENALRIYSKPVSGITAGEIASGLTEISAIYEALNEPEEALKLLQKAVKLLEGIPGQYRTIAGIEAQMGVMFYMVGRHVDAWKSFDNAVTKLRGGGERKSAFFGFVLNQMGLACVQLYKIEEAATHFEEAREILERECGTYHLDTLGVYSNLAATYDALGRVEDAIQILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRSRSGKSLEKLIDSNTLKMKKEGRRRWGAFGLRT 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00968 579 Coils Coil 123 143 - -
Trre15g00968 579 Pfam Tetratricopeptide repeat 276 350 - -
Trre15g00968 579 Pfam Tetratricopeptide repeat 448 519 - -
Trre15g00968 579 SMART tpr_5 487 520 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 153 186 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 319 352 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 445 478 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 362 395 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 110 143 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 277 310 IPR019734 GO:0005515
Trre15g00968 579 SMART tpr_5 195 228 IPR019734 GO:0005515
Trre15g00968 579 Gene3D Tetratricopeptide repeat domain 444 554 IPR011990 GO:0005515
Trre15g00968 579 SUPERFAMILY TPR-like 110 523 IPR011990 GO:0005515
Trre15g00968 579 Pfam MalT-like TPR region 114 263 IPR041617 -
Trre15g00968 579 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 38 560 - -
Trre15g00968 579 Gene3D Tetratricopeptide repeat domain 265 443 IPR011990 GO:0005515
Trre15g00968 579 Gene3D Tetratricopeptide repeat domain 153 264 IPR011990 GO:0005515
Trre15g00968 579 Gene3D Tetratricopeptide repeat domain 49 151 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00968 Trre-Chr15 7550615 7553411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00968 - - cam:101489796 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00968 15 7550615 7553411 Trre15g00968 15 7550615 7553411 ECH