Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00957 ATGGAAACCAATAAGAACATGAACCAAACCTCAACCACTACCATAGAAGCAGAATTTGAGGACTTGTTACCAGTGATGGCAGAGAAACTTGATGTTGAAACCTTTGTATCTGAACTATGCAATGGTTTTAATCTTCTTGCAGACCAAGAAATAGGTTTGATCACAAGTGAAAGTCTTAGGAAAAACTCAGCTATGCTTGGAATGGATGGAATGAGTAAAGAAGATGCTGAAGCTATGGTCAAACAAGGTGATCTTGATGGAGATGGAAAATTGAATGAGACAGAATTTTGTATATTGATGGTTAGGCTTAGTCCTGAAATGATGCAAGATGCTGAAACTTGGTTGGAGAAAGCAATTGAGGAACAGCTAAGAAATTAA 378 0.373 METNKNMNQTSTTTIEAEFEDLLPVMAEKLDVETFVSELCNGFNLLADQEIGLITSESLRKNSAMLGMDGMSKEDAEAMVKQGDLDGDGKLNETEFCILMVRLSPEMMQDAETWLEKAIEEQLRN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00957 125 Pfam EF-hand domain pair 52 102 IPR002048 GO:0005509
Trre15g00957 125 PANTHER CALCIUM-BINDING PROTEIN KIC 17 124 IPR044205 GO:0005509
Trre15g00957 125 Gene3D - 16 125 - -
Trre15g00957 125 SUPERFAMILY EF-hand 24 124 IPR011992 -
Trre15g00957 125 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Trre15g00957 125 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00957 Trre-Chr15 7445361 7445738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00957 10 125 EF-hand Containing Proteins AT2G46600 72.414 1.62e-60 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00957 K24345 - gmx:100802677 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00957 15 7445361 7445738 Trre15g00957 15 7445361 7445738 ECH