Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00907 ATGGCAACAGTGACTGCTTCAAGTAACATTGTATCAAGAATTTCTCATGTCAATATGTCAACTGTCTCATGTGAGTCTAAAACCGCGGCACCAATGAGACTTGGTTATATGAGGAAAGCTAATACTCATAATGGACTCAGAGTTTTGAATTCATTGGATGAGCTATTAAACAGAAACTCAATTAAAATGAAGGGAGTGCAATCAAGGAAGAAGGGTCTTCAGAGAAAGAGTGTTAGGCCTAAAGGTATTATAATTTGTGGCTTGAATTTGATCTTTGTTGGAACTGAGGTTGCTCCATGGAGTAAAACTGGTGGTTTAGGTGATGTTCTAGGAGGTCTTCCACCAGCATTAGCAGCTAATGGGCACAGAGTTATGACAATCGCACCGCGCTATGATCAATACAAAGATGCATGGGATACAAGTGTAGCAATTGAGATAAAAGTAGGAGATAGAAAAGAAACAGTTCGCTTCTTCCATTGCTTTAAAAGAGGAGTTGATCGCGTCTTTGTAGATCACCCTATATTTCTTGAAAAGGTTTGGGGTAAAACTGGAACAAAAATCTATGGACCTGCGGCAGGAGATGATTACCAAGACAATCAACTTCGATTTAGCCTCTTCTGTCAGGCGGCTCTGGAAGCAGCAAGAGTTCTGAATCTCGAGAGCAATAAATATTTTTCAGGACCATATGGCGAAGATGTCATTTTCGTCGCTAACGATTGGCACACCGCCCTTATCTCATGCTACTTGAAATCTATGTACCAATCAATTGGCCTCTTTAGGAATGCCAAAGTTGTTTTTTGTATACACAACATTGCTTATCAAGGAAGATTTGCATTCGCCGACTATTCACTTCTCAATCTCCCTGATCAATTTAAAAGCTCATTTGACTTCCTTGATGGGCATGTTAAACCAGTTGTTGGAAGAAAAATTAATTGGATGAAAGCTGGAATATTGGAATCTCATTTGGTTTTAACTGTTAGTCCATATTATGCTCAAGAACTAGTATCAGGCCCAGATAAAGGTGTTGAGTTGGACAACATTTTACGCCGAACTGGTGTTACTGGAATCGTAAATGGCATGGATGTTCAAGAGTGGAATCCGTCCACCGACAAATACATAACTGTCAAATATGATGATTTGACAGTATTGGAAGGAAAGGCACTTCTGAAAGAAGCACTCCAAGCAGAAGTTGGTTTGCCGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGAAGGCTAGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCTCAATTTATAAAGGAGAATGTTCAGATAGTAGCCCTAGGAACAGGAAAAAAAGAAATGGAAAAGCAACTTCAACAACTTGAAATATCATACCCTGACAAAGCCAGAGGAGTTGCAAAATTCAATGTTCCCCTAGCTCACATGATAATTGCAGGAGCTGATTTTATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTACGGAGCTGTACCTATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTCAAAGAAGGTGTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGATGCTGTGGATCCAGTTGATGTGGATGCTATAGCAAAGACTGTCACAAAGGCCCTTAGAGTCTATGGAACTGTAGCTTTTGCAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTTCTGCTAAGTTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACTCCATGA 1845 0.4054 MATVTASSNIVSRISHVNMSTVSCESKTAAPMRLGYMRKANTHNGLRVLNSLDELLNRNSIKMKGVQSRKKGLQRKSVRPKGIIICGLNLIFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTSVAIEIKVGDRKETVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPAAGDDYQDNQLRFSLFCQAALEAARVLNLESNKYFSGPYGEDVIFVANDWHTALISCYLKSMYQSIGLFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFLDGHVKPVVGRKINWMKAGILESHLVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSTDKYITVKYDDLTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKENVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADFILIPSRFEPCGLIQLQAMRYGAVPIVASTGGLVDTVKEGVTGFQMGSFNVECDAVDPVDVDAIAKTVTKALRVYGTVAFAEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00907 614 Gene3D Glycogen Phosphorylase B; 361 571 - -
Trre15g00907 614 FunFam Starch synthase, chloroplastic/amyloplastic 89 365 - -
Trre15g00907 614 Pfam Glycosyl transferases group 1 402 527 IPR001296 GO:0016757
Trre15g00907 614 Pfam Starch synthase catalytic domain 90 349 IPR013534 -
Trre15g00907 614 FunFam Starch synthase, chloroplastic/amyloplastic 366 571 - -
Trre15g00907 614 NCBIfam glycogen/starch synthase, ADP-glucose type 89 587 IPR011835 GO:0004373
Trre15g00907 614 CDD GT5_Glycogen_synthase_DULL1-like 89 588 - -
Trre15g00907 614 Hamap Glycogen synthase [glgA]. 88 589 IPR011835 GO:0004373
Trre15g00907 614 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 39 592 - -
Trre15g00907 614 Gene3D Glycogen Phosphorylase B; 90 580 - -
Trre15g00907 614 MobiDBLite consensus disorder prediction 593 614 - -
Trre15g00907 614 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 80 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00907 Trre-Chr15 6907155 6911263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00907 1 614 Glycosyltransferase AT1G32900 71.104 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00907 K13679 - gmx:100037476 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00907 15 6907155 6911263 Trre15g00907 15 6907155 6911263 ECH