Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00906 ATGGAGCTCGACCTCCGCTCATTCCTTCCCGACGACACCGACGCAGCCGATCTCCACGTCACTCATCAACGAACCGTCGACGAAATTCTCAACGACTGCGATACTTCCTCATCTTCATCATCACCTTCTCCTCCTTCTTCTCCTCGTAACAACAACAACAACAATAAACCCATTCAATTTCCTCAACCCGTACCCGTTTCTATTTCTCGGGTCAAACCCGATAAACCTCCACGCCCATTCTCATCCTTATTCGGTCGTGTTACACCTAATGCTAAACCCGGTGCTGCTCTTGCTGCTGCCGCCGCTGCTTCCAGATCTGTTCCGACTCCACATGCGGCGGCGATTATTTCTAGGAGGAGAAGTTATAATTCTGTTAGAACTGAATCGGATGGTTCTGATGTTGATTCTAAAGGTAGTGAATTGAGTGAGAAAGTTGATGATTCTGTTGATAGGAAAATTGAGAGTGTTGATGATGTTGAAATTGGTGGAATTGCAGCAATTGAAGTCAATGAGAATGATAATGGTGTTGATATTCAGGTGAAGAATGATTGTTCTGGTATGAATGAGGTGAAGAGTGGTTTAGATGAGTGTTCTATTTCTCCTTTATTGAATGATGTTGAAAATGGTCATGATCATGATCATGATAAGGGTTTGAATTCTACACCTTTTCATGTTGTTGATGATGATGATGATGGTTTTGGTGAAAAAACTAGTCTTGATTATGTTGATAATGATAAGGGTGTTAATGAAACAGAAGAAGAAATTGTGAATGGTGTTGGTGTTAGTGGTGATGGTGGTTCCGTTGAAGGTATTGAGAATGGTGTGAATGATGATGATGGTGGTGGCTCTGATGATGATGATGGTAGTTCAATTGGTGATGTTTTTGAATTAGTAGAGAATACACTTGAGGAATTGGAAAGTGTAAGTGTTAAAAAGAAAAAATCGGAGTTTTCGAAGAAGCCACTTGATTTAGCTGAAGAATTGGAGAAGAAGAATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCAGCTGCGCAACCAATGAGGCTTGAGGGTGTTCGGAGAGGGTCGATTCAATTGGGATATTTTCATGTTGATGCTGATAATGCTATCACAAGGACCATTTCATCGCAAACATTTAGGCGTGACCATGGTTCTGCTAAAGTTTTGGTGGTTCATGCTAATTACATTGCAGTTGGAATGACAAAAGGGCTCATTGTTGTAGTTCCTAGTAAATATTCAATTCATCATGTGGATAATACAGATGGAAAGATGTTGATGCTTGGTATACAAGGTGATCGATCACATGCTCCAGTGACGTCCATGTCTTTTAATCAGCAAGGTGATCTTCTTTTAGCTGGTTATGGTGATGGTCATGTTACACTTTGGGATGTACAGAAAGGGGTAGTGGTAAAAGTTATTAGTGGAGAGCATACGGCACCAGTGGTACATGCCTTTTTTCTAGGACAAGATCCCCAGAATACTCGTCAATTTAAAGCAGTTACAGGTGATTGTAAGGGTCTGGTTCTCTTACATCATATCTCAGTGGTTGTTTTGATTAATAGATTCAAAATTCAAACTCAGTGTCTTCTTGATGGACAAAATACGGGCTTGGTACTATCTGCTTCACCACTCCTTTTCGATGAATTCGGTGGAAGTGCCTCTTCTTATTCCCAGGGAAACACTACAGTCTCAGCCAGCAGTATAAGTAGCATGGTCGGAGGTGTTGTCGGAGGAGAAGCAGGTTGGAAACTCTTCAATGAAGGCTCTTCTCTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTCAGTCCCAAATTGGAAGTCTATGCTCAACTCTCTAGGCCAAATGGAATTCGAGAGGGTTCTATGCCATATACTGCGTGGAAATACATGCCACAAACATCTAGTTCTACTGAAAACATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTAGCAATAGCTTGGGAACGGAAAGTTCAGGTTGCAAGGTTGGTCAAATCAGAATTAAAAGTATATGGAGAATGGTCTCTTGACAGTGCTGCTATAGGTCTGGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAACTGGACAACTGAATTTATTTGCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTGGTGTAGATGGTATTGGAGGAGATGAACTACTTTCATATCATACCCACTTCGTTAACATATATGGGAACCCTGAGAAAGGTTATCATAACTCCATTGCTATAAGAGGAACTTCTATTTATATACTTGGTCCAACACATCTTATAGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATCTTGGTTTTACGGAAAGCAGGTGATTGGATGGGTGCCTTGAACATGGCAATGACTCTTTACGATGGCCATGCTCACGGGGTTGTTGATCTACCTAGAACCTTGGACGCTATACATGAAGCTATAATGCCCTTCTTGGAGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCTTTTTGCAACCAAATTGGAAAACCTGATCAACCCAATGATTCAAATAGTAGAAGCAATTCAGTGAATTCTGAAATAAAGGAACAATACACTCGTGTTGGTGGAGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACAGACATCCTTTTTGATAAAATTTTCTCCAAGTTCATTGACGTTCATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGATATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCAAAAAAGGGTGGCTACAGCGAGTTGAGCAATGTGTACTTCACATGGATATTTCATCCTTGGATTTTAATCAGGTGGTCAGATTATGCCGGGAGCATGGACTATATAGTGCCCTAGTGTATCTCTTCAATAAAGGATTGGATGATTTTAGAGCACCTCTTGAGGAGCTCTTTGCAGTCCTACAAAATAGCCAGAAGGAAAATGCTATTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTGCCTTTCCACCAGGCCATGGACCTATTCCTCCTACGCGGCTGCGATCTCTTAGAAAAGAACTTGTAGAGTTTTTGTTAGAGGACTCCAGTGCTATGAAATCACGAACAGTTTCAGGTTCTATGTCCAAACAGCCATACCTGAATCTATATCTCCTCTTAGAGTTAGACACTGAAGCTACATTAGATGTCCTCCGATGTGCTTTCATGGAAGATAAAATTTCAAATTCCAGCTCATCTTCACAGGAGTCAGCTGATAGACCCATCGAAGAAGCAATAGAAGAAAATAATGTTACTGAAACTGAAAATGTTTTGGTTCAGAATACGGTGGATGCTCTTATTCAAATTACTGATATGAATGTTGTTCCATCAGATACAATCTCTAGTAGTGGGGATGACGGATTAACAAAAGAGGGGACTTCGAAAGACAAAGGTTGTCTGTTTGAGTTCATTGCATATTATGTTGCTCGCCAAAGAGCTAAAGTTTCAAAGGGCATGCTTTGTCGAATATTGGAATATTTGACATTGGATAATCACATTTCAACTAATGTTTCTTCTCATAGTTCAACTCCGAAAAATAGGGAGAAGCAAGTGCTTGCACTTCTAGAAGTAGTTCCTGAGTCCGACTGGGATGTACCATTTCTGCTAGACCTATGTGAGAGAGCCAAATATCATCAGGTTTGTGGATTGATTCATTCCATCAGACATGAGTATGTGGCTGCATTGGATAGCTATATGAAGGATGTAGATGAGCCTGTTCATGCCTTCTCCTTTATCAACAAAGCATTCTCACAGTTTATTGGTAATGACCGTGCTGTTATTCGATCAGCAGTCCTATCTCGAATTCCTGAATTGGTTGAACTAAGCAGGGAGGGTGCATTCCATATGGTTACCAGACATTTTAGTGATGAAAGTTCCCATATCATCACTAAACTTCATTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTACACTTATTTGGCACCCTAGACTTGTCTGGTTTGACGAAGGATATTATTACGAATCCCCCTAATGGAAAACAGGTTAAGGATCCTCCACAAGGAATTCATGATTACTTAGAAAATATATCGGATTTCCCCAAGTACATGCGTGAAAATCCAAGTCATGTGCCTGATGATCTTATTGAGCTTTACCTAAAGCTATTATGTCAGTATGAACGGAGTTCAGTTCTAAAGTTTCTAGAAATGTTCGATAGCTATCGTGTGGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATAGATGCTGCTGCTTTCTTATTGGAAAGAGTTGGTGATGTTGGTAGTGCTCTTTCACTTACTCTTTCTGATCTGAATGATAAATTTGTTGAGCTCGATACTGCTGTGGAGGCTGTAGTCTTAAACCATCCCAAGCTTGATTCTTCCCATACAGAAGTATTCAACGCTGTTTTAAGAACAAAAGAGGTGAATGGCATGTATGATTTATTGCATGCCTGTATCGGTCTGTGTCAGCGGAACACTCCTCGTCTAAATCCTGAGGAGTCAGAGTCACACTGGTTTAAATTACTGGACTCGTTTTGTGACCCGTTGATGGATTCATATGTTGAAGAGAGAGCATATGACAGAAAAAATTATTTTGGTGTGCTGGCTGGATCAGCAGATTCACAACTGGATAAAGACACCTATAAAAGCAGTTGGAAAGTTTCAAAGTCCCAAAATGGTGATATCTTGAGAAAACTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATAGGTTTTGTTCACCTTCCGGCTATCATGTCCAAGCTCTTATCTGATAATGGCAGTCAAGAATTTGGATATTTTAAACTTACCATATTAGGGATGCTGGCAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCCTTGATAGAGGATGATACATTCTATACCATGAGTTTACTCAAGAAAGGGGCATCTCACGGATTTGCTCCCAGGACTTCAGTGTGCTGTATTTGTAATGCCTTGCTTACGAAAAACTCAGTTACCACTGGAATTCGAATTTTCAACTGTGGCCATGCAATTCATCTCCAGTGTGAAGTCTCGGAAGTTGAGTCGTCAAGCAAAGGATTTTCATCTGGATGCCCTGTATGCATGCCTAACCAAAAACCCCAAAAGTCTAGAAACAAATCAATCATTACAGATAATGGTTTGGTCAATAGATTCTCATCAAGACGCCAACACCCGCATGGAAGTACAATTCATCACCATGACAATGATTTATCAGAGAATATGTATGGAGGACAACAGCAACTGATATCAAGGTTTGAGATCTTGAGCAGCCTGAAGAAAAATCCAAGATTTATGCAATTAGAAAACTTGCCTCCTTTGAGACTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTAGCACACTATCAGACTGGAGAAAGTAGCAACAGTTCTGCAGTTATAGATAAACATAGTCGTCACAAACAAAGCCGGGAGCTGAGAGTTAGAGGTTCATCGATTCGGTTTCCTCTAAAATCAAGTATATTTGGCAAGGACAAGACGAATAAGCGGTGA 5676 0.4059 MELDLRSFLPDDTDAADLHVTHQRTVDEILNDCDTSSSSSSPSPPSSPRNNNNNNKPIQFPQPVPVSISRVKPDKPPRPFSSLFGRVTPNAKPGAALAAAAAASRSVPTPHAAAIISRRRSYNSVRTESDGSDVDSKGSELSEKVDDSVDRKIESVDDVEIGGIAAIEVNENDNGVDIQVKNDCSGMNEVKSGLDECSISPLLNDVENGHDHDHDKGLNSTPFHVVDDDDDGFGEKTSLDYVDNDKGVNETEEEIVNGVGVSGDGGSVEGIENGVNDDDGGGSDDDDGSSIGDVFELVENTLEELESVSVKKKKSEFSKKPLDLAEELEKKNASTGLHLEEGAAAQPMRLEGVRRGSIQLGYFHVDADNAITRTISSQTFRRDHGSAKVLVVHANYIAVGMTKGLIVVVPSKYSIHHVDNTDGKMLMLGIQGDRSHAPVTSMSFNQQGDLLLAGYGDGHVTLWDVQKGVVVKVISGEHTAPVVHAFFLGQDPQNTRQFKAVTGDCKGLVLLHHISVVVLINRFKIQTQCLLDGQNTGLVLSASPLLFDEFGGSASSYSQGNTTVSASSISSMVGGVVGGEAGWKLFNEGSSLVEEGVVVFVTHQTALVVRLSPKLEVYAQLSRPNGIREGSMPYTAWKYMPQTSSSTENMSAEAVERVSLLAIAWERKVQVARLVKSELKVYGEWSLDSAAIGLAWLDDQMLVVLTSTGQLNLFAKDGTVIHQTSFGVDGIGGDELLSYHTHFVNIYGNPEKGYHNSIAIRGTSIYILGPTHLIVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAIHEAIMPFLEELLTSYVDEVFSYISVAFCNQIGKPDQPNDSNSRSNSVNSEIKEQYTRVGGVAVEFCCHIKRTDILFDKIFSKFIDVHVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSKKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSQKENAIALGYRMLVYLKYCFTGLAFPPGHGPIPPTRLRSLRKELVEFLLEDSSAMKSRTVSGSMSKQPYLNLYLLLELDTEATLDVLRCAFMEDKISNSSSSSQESADRPIEEAIEENNVTETENVLVQNTVDALIQITDMNVVPSDTISSSGDDGLTKEGTSKDKGCLFEFIAYYVARQRAKVSKGMLCRILEYLTLDNHISTNVSSHSSTPKNREKQVLALLEVVPESDWDVPFLLDLCERAKYHQVCGLIHSIRHEYVAALDSYMKDVDEPVHAFSFINKAFSQFIGNDRAVIRSAVLSRIPELVELSREGAFHMVTRHFSDESSHIITKLHSHPRSLFLYLKTLIELHLFGTLDLSGLTKDIITNPPNGKQVKDPPQGIHDYLENISDFPKYMRENPSHVPDDLIELYLKLLCQYERSSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSALSLTLSDLNDKFVELDTAVEAVVLNHPKLDSSHTEVFNAVLRTKEVNGMYDLLHACIGLCQRNTPRLNPEESESHWFKLLDSFCDPLMDSYVEERAYDRKNYFGVLAGSADSQLDKDTYKSSWKVSKSQNGDILRKLLSQFIKEIVEGMIGFVHLPAIMSKLLSDNGSQEFGYFKLTILGMLATYGFERRILDAAKSLIEDDTFYTMSLLKKGASHGFAPRTSVCCICNALLTKNSVTTGIRIFNCGHAIHLQCEVSEVESSSKGFSSGCPVCMPNQKPQKSRNKSIITDNGLVNRFSSRRQHPHGSTIHHHDNDLSENMYGGQQQLISRFEILSSLKKNPRFMQLENLPPLRLAPPAVYHEKVSKVAHYQTGESSNSSAVIDKHSRHKQSRELRVRGSSIRFPLKSSIFGKDKTNKR 1891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00906 1891 SUPERFAMILY RING/U-box 1697 1751 - -
Trre15g00906 1891 MobiDBLite consensus disorder prediction 1844 1871 - -
Trre15g00906 1891 MobiDBLite consensus disorder prediction 118 149 - -
Trre15g00906 1891 Pfam Anaphase-promoting complex subunit 4 WD40 domain 422 479 IPR024977 -
Trre15g00906 1891 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1359 1522 IPR000547 GO:0006886|GO:0016192
Trre15g00906 1891 ProSiteProfiles Zinc finger RING-type profile. 1698 1746 IPR001841 -
Trre15g00906 1891 MobiDBLite consensus disorder prediction 32 62 - -
Trre15g00906 1891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 468 - -
Trre15g00906 1891 MobiDBLite consensus disorder prediction 1854 1869 - -
Trre15g00906 1891 ProSitePatterns Trp-Asp (WD) repeats signature. 451 465 IPR019775 -
Trre15g00906 1891 SUPERFAMILY WD40 repeat-like 392 721 IPR036322 GO:0005515
Trre15g00906 1891 MobiDBLite consensus disorder prediction 32 88 - -
Trre15g00906 1891 Pfam Golgi CORVET complex core vacuolar protein 8 915 1099 IPR025941 -
Trre15g00906 1891 SMART ring_2 1698 1746 IPR001841 -
Trre15g00906 1891 Gene3D - 368 512 IPR015943 GO:0005515
Trre15g00906 1891 MobiDBLite consensus disorder prediction 258 291 - -
Trre15g00906 1891 PANTHER VACUOLAR PROTEIN SORTING VPS41 304 1821 IPR045111 GO:0006623
Trre15g00906 1891 MobiDBLite consensus disorder prediction 123 149 - -
Trre15g00906 1891 Pfam Region in Clathrin and VPS 1415 1493 IPR000547 GO:0006886|GO:0016192
Trre15g00906 1891 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 473 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00906 Trre-Chr15 6889254 6900181 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00906 K20178 - gmx:100780869 2692.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00906 15 6889254 6900181 Trre15g00906 15 6889254 6900181 ECH