Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00905 ATGTCTTTCACTGCAACAAAATTCTCACACTCTCTTCTTGCTGTTCCTGTGAATTCTTCAACTCCTAGATCCAATGATAAACCATTTTCTTTCTCTTCTGATCTCTTCAAACACAACAACCCTTCTTCCTCTTTTCTTGGATCCACTCAAAAGCTTCTTCGTTTCAATGCTTTCAATAAGCCTTTTCTTCATCGCCGTTCATCATCACCTTCTGCTGTTCTTCTTCAACAAACATCCAATTTGCTTATTACTAAAGAAGAAGGGTTAGTGCTTTATGAAGACATGGTTTTAGGGAGATCCTTTGAGGACAAGTGCGCTGAGATGTATTATAGAGGTAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGATTCATAAAGTATTTGAGGCAAGAAGATTGCATAGTGAGCACATACAGAGACCATGTTCATGCATTGAGCAAAGGGGTCCCTTCTCGAGCTGTGATGAGTGAGCTTTTCGGGAAGGCGACTGGATGCTGCCGAGGTCAAGGTGGTTCAATGCATATGTTCTCAAAAGAACACAATGTGCTTGGTGGTTTTGCATTCATCGGTGAAGGAATTCCAGTGGCAACCGGTGCAGCATTTTCCATGAAGTACAAAAGAGAGGTGTTGAATCAGGCAGATTCTGATAATGTTACATTGGCATTTTTCGGAGACGGAACTTGTAATAACGGTCAGTTCTTTGAGTGCTTGAACATGGCAGCTTTGTGGAAATTGCCTATTGTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGATGTCACATATCAGGGCAACTTCAGATCCTCAGATATGGAAAAAGGGTCCAGCATTCGGAATGCCGGGGGTTCACGTTGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCGAAGGAAGCAATTGACAGGGCTAGAAGAGGAGAGGGACCAACTTTAGTGGAATGTGAGACTTATAGATTTAGAGGACACTCATTGGCCGATCCTGATGAGCTTCGTAACCCTGCTGAGAAGGAACACTATGCTGGTAGGGATCCAATCACTGCATTGAAGAAATACCTTTTCGAGAACAAATTAGCCACTGAACAAGAATTGAAGACAATAGACAAGAAAATTGATGAGATCCTTGAGGACGCTGTTGAATTTGCCGAAAAGAGTCCTCAACCGCCTCGCAGCCAGCTGCTCGAGAATGTCTTTGCTGATCCAAAAGGTTTTGGAATCGGACCGGATGGAAGGTACAGATGTGAGGATCCAAAGTTTACAGAAGGCACTGCTCATGTCTAA 1302 0.4316 MSFTATKFSHSLLAVPVNSSTPRSNDKPFSFSSDLFKHNNPSSSFLGSTQKLLRFNAFNKPFLHRRSSSPSAVLLQQTSNLLITKEEGLVLYEDMVLGRSFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKYLRQEDCIVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSMKYKREVLNQADSDNVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHIRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIDRARRGEGPTLVECETYRFRGHSLADPDELRNPAEKEHYAGRDPITALKKYLFENKLATEQELKTIDKKIDEILEDAVEFAEKSPQPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00905 433 FunFam Pyruvate dehydrogenase E1 component subunit alpha 57 414 - -
Trre15g00905 433 Pfam Dehydrogenase E1 component 94 395 IPR001017 GO:0016624
Trre15g00905 433 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 79 408 IPR029061 -
Trre15g00905 433 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 76 416 - -
Trre15g00905 433 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 86 406 IPR017597 GO:0004739|GO:0006086|GO:0043231
Trre15g00905 433 CDD TPP_E1_PDC_ADC_BCADC 91 389 - -
Trre15g00905 433 Gene3D - 49 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00905 Trre-Chr15 6882341 6886238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00905 41 433 Acyl Lipid Metabolism Gene Families AT1G01090 81.454 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00905 K00161 - gmx:100811207 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00905 15 6882341 6886238 Trre15g00905 15 6882341 6886238 ECH