Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00883 ATGGTGGTAGCTGCTAAGTTTAATTTGAGAAGAGGAAACAGTGGTTCTTGTTCTTCTAATAATGTTGTTATTAATGACTGTGATGGAAGAGAATTTTCTAGAAGAAATAAGAGTGGATGTTTTTCATCAATGGTAGAAGTTGATAAAGATCCTTCTTGTGTTTCATTCACTACTTTCAATATTCTTGCTCCTATTTACAAACGGATTGATCCACAGAACCAAGGAGTTAGAGAAAGTGATTGCAGATCATTTTGGTTAGCTAGGAATCAAAGGATTCTTGATTCATTGCTTTCCGAATCATCTTCCATTATGTGCCTACAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTCGGGGATGCTGGCTATCAGCTCTTCAAGCTTGCTCGAACCAACAACCGTGGAGATGGTCTGCTGACTGCTATACGTAAAGACCATTTAAGTATTGTGAATTATCGAGAGTTGCTTTTCAATGATTGCGGCGACCGTGTTGCTCAGTTGTTACATGTTCAATCAGTTAATCCCATTTTACAAAACCAAAAAGACAGTCTTAACCAAGAGTTTCTGATTGTGAATACTCACTTATTATTTCCTCACGATTCAAGCCTGTCTATAGTAAGATTAGATCAGGTTTATCAAATATTACAATATGTCGAATTGTATCAGAGAGAAAACCGGCTCAAACCAATGCCTATTATACTCTGCGGTGACTGGAACGGAAGCAAGCGTGGACATGTTTACAAGTTCCTCAGGTCACAGGGGTTTGTATCATCATATGATATTGCCAATCAATATACCGATAGTTATGCCGATGCACACAAGTGGGTTAGTCACAGAAATCATAGAGGAAATATATGTGGTGTTGATTTCATTTGGCTTTGCAATCCTAACCAAGCGCGTAAACCCATGAAAACAAGTTGGGCTGAAGCTGTTTTTAGTATACTAAAGTTCCAACTTCGGAAGGCATCATTGTCTGAAGATGATGCATTTACCTTTCTGAAGGGTGACAACTGTACTGATTCTGTGACGTATTTTAGTTTTTCCGAAGCACTTCGTAAGGTAAAGTTAATTGGTGTGCCTTATGGACTATGTTTCCAACAGTTGCAAGATCTATGGAATCAAGCTGATGTAGATGGAAATGGTGTCATCGACTTCGAAGAATTCAAGCAAAAGATTTGGAATTCTACATGTTCAGAGCATGTGTGTATGGAGGATTCAAACACTGAGCAGGAGCAAGAAGCCGTTGGTTTTAAGGTGAAGAACGCAATGTTGTTTCCGCGTGAAATGGAGAAAGGACTTTGGCCTGAAGATTACTCTCTTTCTGATCATGCTAGGTTAACTTGTGTATTTTCACCGGCAAAGATGTCATGTTCTTCTCTATAA 1401 0.3883 MVVAAKFNLRRGNSGSCSSNNVVINDCDGREFSRRNKSGCFSSMVEVDKDPSCVSFTTFNILAPIYKRIDPQNQGVRESDCRSFWLARNQRILDSLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYQLFKLARTNNRGDGLLTAIRKDHLSIVNYRELLFNDCGDRVAQLLHVQSVNPILQNQKDSLNQEFLIVNTHLLFPHDSSLSIVRLDQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYTDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPMKTSWAEAVFSILKFQLRKASLSEDDAFTFLKGDNCTDSVTYFSFSEALRKVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSTCSEHVCMEDSNTEQEQEAVGFKVKNAMLFPREMEKGLWPEDYSLSDHARLTCVFSPAKMSCSSL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00883 466 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Trre15g00883 466 SUPERFAMILY DNase I-like 49 277 IPR036691 -
Trre15g00883 466 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 31 456 - -
Trre15g00883 466 Gene3D Endonuclease/exonuclease/phosphatase 33 462 IPR036691 -
Trre15g00883 466 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Trre15g00883 466 SUPERFAMILY EF-hand 349 398 IPR011992 -
Trre15g00883 466 FunFam Putative calcium-binding protein 38 460 - -
Trre15g00883 466 Pfam Endonuclease/Exonuclease/phosphatase family 85 268 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00883 Trre-Chr15 6574668 6577872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00883 119 464 EF-hand Containing Proteins AT1G02270 67.422 7.32e-177 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00883 - - tpra:123884643 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00883 15 6574668 6577872 Trre15g00883 15 6574668 6577872 ECH