Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00881 ATGGCGATAGGTGGAAAGAGGAAGAGGAACAACGATTCAGACGGCGAAGATGATTCTTCCAGGAGAAGAACCAGAACGGAGCCGGAAAAAGAGTTCAAAGAGCCATTCCGCCCTTCCATGATTAAGAACAAGGAAAAACGTTCGGAAGTTCATGCTAAACTTAAGCATCAGAAGAAGCTCGAAAAACGCGCTAAATCGAAGGCTCGTGAGGCTGCTGTTAATAGAGCTATCGAACTCGGTGAAGAGCTTCCGGAGAAGAAGGTGCCCCGTACGATTGAGAATACAAGGGAAGTAGATGAGACTGTTTGCAAGCCTGATGATGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTCAGTTCCGTTTTAAATAGGCAACATAATCCTAAGATATTAATCACCACTTGCCGCTTCAATTCTACGAGGGGACCTGCTTTTATATCTGAATTGCTTACGGTTATACCAAATGCACATTACTTCAAGAGAGGAACCTATGATTTAAAAAAGATTGTAGAATATGCAAACAAACAGGACTTCACTTCTGTTGTAGTTGTACACACCAATCGCAGAGAACCAAATGCGCTCTTAATTATTGGGTTACCTAATGGACCTACTGCTCATTTCAAACTCACAAATCTTGTTTTACGCAAGGATATTAAGAATCATGGAGTTCCTACTAGTCACCAGCCCGAGCTTGTGTTGAACAACTTCACAACACGCCTAGGGCATCGAGTTGGAAGGATGATACAGTCACTTTTCCCACAAGATCCAGAGTTTAAAGGCCGACGTGTTGTTACCTTTCACAACCAAAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTCGAAACCAAAGAAATTAAAAAGATAGAGTCTAAAGGTAAAAAAGACGGGGATGGCAAGAGTGAGAAGGTTCCTGACCACAAAACAACTGCCCGTCTTCAGGAATGTGGCCCTCGTTTCACATTGAAATTAGTTAGCCTGCAGCATGGAACATTTGACTCTAAAGGTGGAGAATATGAGTGGGTTCACAAGCCGGAAATGGACACAAGTCGAAGAAGGTTTTTCCTTTGA 1077 0.4253 MAIGGKRKRNNDSDGEDDSSRRRTRTEPEKEFKEPFRPSMIKNKEKRSEVHAKLKHQKKLEKRAKSKAREAAVNRAIELGEELPEKKVPRTIENTREVDETVCKPDDEELFAGNDADEFSSVLNRQHNPKILITTCRFNSTRGPAFISELLTVIPNAHYFKRGTYDLKKIVEYANKQDFTSVVVVHTNRREPNALLIIGLPNGPTAHFKLTNLVLRKDIKNHGVPTSHQPELVLNNFTTRLGHRVGRMIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEIKKIESKGKKDGDGKSEKVPDHKTTARLQECGPRFTLKLVSLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00881 358 FunFam Ribosome production factor 1 129 325 - -
Trre15g00881 358 Gene3D - 129 325 - -
Trre15g00881 358 SMART Brix_2 132 329 IPR007109 GO:0006364|GO:0019843
Trre15g00881 358 MobiDBLite consensus disorder prediction 1 68 - -
Trre15g00881 358 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 38 358 IPR044281 GO:0006364|GO:0042134
Trre15g00881 358 ProSiteProfiles Brix domain profile. 129 335 IPR007109 GO:0006364|GO:0019843
Trre15g00881 358 Pfam Brix domain 142 327 IPR007109 GO:0006364|GO:0019843
Trre15g00881 358 MobiDBLite consensus disorder prediction 7 50 - -
Trre15g00881 358 MobiDBLite consensus disorder prediction 292 314 - -
Trre15g00881 358 SUPERFAMILY Class II aaRS ABD-related 128 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00881 Trre-Chr15 6562935 6567597 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00881 K14846 - gmx:100785331 564.303