Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00857 ATGGCGGAGAAAGCATGCATCAAGCGTCTTCAGAAGGAGTATAGAGCCCTTTGTAAAGAGCCAGTTTCTCATATTGTGGCTCGCCCTTCACCAAGTGATATTCTTGAGTGGCATTACGTATTGGAAGGAAGCGAGGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCAGAGTATCCATATAAACCTCCTGGAATCAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGTGATTTTCATCCTGAAACTTGGAATCCAATGTGGTCTGTATCAAGCATACTCACCGGGCTTCTTTCGTTCATGATGGACACCAGTCCAACCACTGGCAGTGTAAGCACCACTACTGCCGAGAAGCAGCGTCTAGCAAAATCTTCACTCTCTTTCAATTGCAGAAATGCAACATTCAGGAAAATGTTCCCTGAGTACGTTGAGAATTACAACCAGCAGCTTCTTTCTGAGCAAGCTGCTTCAGAACAGCATGCCTCATCAGAGTCTCGTCATGATAAAAGTTCAAGGTCTGTTTCGGAAACGAATTTAGACTCAACACCAGAAGACATAAAAAAGGTAGAGGGATTGAATGGTGTGAGGAGAAACAAAAAACAACCATTTCCAACATGGTTGATGTTGTTGCTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTGCTTCAGCTGTGA 723 0.4329 MAEKACIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPETWNPMWSVSSILTGLLSFMMDTSPTTGSVSTTTAEKQRLAKSSLSFNCRNATFRKMFPEYVENYNQQLLSEQAASEQHASSESRHDKSSRSVSETNLDSTPEDIKKVEGLNGVRRNKKQPFPTWLMLLLFSIFGVVMALPLLQL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00857 240 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7 137 - -
Trre15g00857 240 SUPERFAMILY UBC-like 6 159 IPR016135 -
Trre15g00857 240 MobiDBLite consensus disorder prediction 174 188 - -
Trre15g00857 240 Pfam Ubiquitin-conjugating enzyme 9 123 IPR000608 -
Trre15g00857 240 FunFam Ubiquitin-conjugating enzyme E2 34 1 177 - -
Trre15g00857 240 Gene3D Ubiquitin Conjugating Enzyme 1 180 IPR016135 -
Trre15g00857 240 CDD UBCc 7 157 IPR000608 -
Trre15g00857 240 MobiDBLite consensus disorder prediction 167 199 - -
Trre15g00857 240 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Trre15g00857 240 SMART ubc_7 8 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00857 Trre-Chr15 6365932 6368772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00857 1 240 Miscellaneous Gene Families AT1G17280 76.250 2.84e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00857 K04554 - gmx:100778181 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00857 15 6365932 6368772 Trre15g00857 15 6365932 6368772 ECH