Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00804 ATGGACGACGAAATGGCAATGGATTCTCCTTTCTTCGATCCTCAAGACCTCACGCCTCGAGACAAGTTCCGCAGATACAGGAAGAGGCATTTAAATTCCAGTGCTTCAGTTGAGCAAGATTACTCGGCTTCTAAGTTAAGTGAAAGTGGGCTGTTTTATGATGGACATAACATCCATAGTCCTACTAATGCTGCACTTATTCTTGAAAATATTAAACAAGAGGTTGAGAGTCTCGATGCCGATTACTTGGATGAGAAGTCTTTGTATTCTTCTAGAAAGAGGTTATCTGCTGATATTGCTGGAGTTCCTGGCATGGATGATGGTTTTGACTCTGTACGCTATTCATTAAAGGCTTGCAAGCAAGAAGGTGACTCGTTGGGAGATGATGCGGACAATATCTTTAATTTGTTCGCTTCTCTGTTTGATTCCTCTTTGACAGGAATGATGCCTATTCCTGATCTGATACTAATATTTGAAAACGAGTGTCGAAATGTTTCAGAATCTATCAGGTATGGTTTGAACACAAGGCATCGAGTTGTTGAGGACAAATTAATGAGGCAGAAGGCTCAGCTCCTGCTTGATGAGGCGGCAACATGGTCTCTCTTGTGGTTCCTTTACGGGAAAGGAAAATATCTGACGGAAGAGCTTTCTAAAGAGAAAATACTGGTGAAGGAAACATCACATGTAGTGGCTTGTGAGTTTGTTGTGGAGGACCATATAGCTCAATTGTGCCTTAGGATAGTCCAGTGGTTAGAAGGTTTAGCTTCTAAAGCACTTGAATTGGAAGCAAAGGTGCGTGGATCTCATGTTGGTAGTTATCTCCCAAGCAGTGGCGTTTGGCATCATACTCAACGTTACCTAAAGAAAGGAATTTCTGATAGGAACCTTGTTCATCACCTGGATTTTGATGCTCCAACTCGCGAAAATACAAATGTTTTGCCCGATGACAAAAAACAAGATGAATCTCTTCTAGAGGATGTATGGACTCTTCTAAGGGCTGGAAGGCTAGAAGAGGCATGTGGACTTTGCCGATCTGCTGGACAGCCATGGAGAGCTTCCTCTCTGTGTCCTTTTGGAGGTTTGAACCTGTTTCCTTCTGTTGAAGCTCTGATGAAAAATGGTAAAAATAGGACTTTGCAAGCTGTTGAATTTGAAAGTGGTATTGGTCATCAGTGGCATCTTTGGAAATGGGCTTCCTATTGCGCATCAGAGAAAATAGCAGAGCTAGGTGGGAAATATGAAGCTGCTGTGTATGCAGCCCAATGCAGCAACCTCAAACGGATGCTTCCACTCTGCACAGACTGGGAGTCAGCATGCTGGGCAATGGCAAAGTCTTGGCTAGATGTGCAGGTAGACTTGGAAGTCACTCGTTCACTGCCAGGAGGAGTTGATCAACATAGAACTTTTGGAGATGTAATTGACCGTAGTCCTGGACAAGTTGACGGTTCCTTTGATCCTTCAAATGGACCTGAAAATTGGCCAATTCAAGTTTTGAATCAACAACCACGACAACTTTCATCTCTTCTGCAAAAACTTCATTCAGGGGAAATGATCCATGAAACTGTTATGCGGCAATGCAAGGAGCAACAACGACAAATTCAGATGAGCTTAATGCTAGCAGACATACCACATGTATTAGACCTTATATGGTCATGGATAGCACCCTTGGAAGATGATCAGAATGTGTTTAGGCCTCATGGAGATCCTCAAATGATACGATTTGGTGCACATCTAGTCCTTGTGCTTAGATATTTACTTCGCGAGGAAATGGAGGCTGCTTTCAGGGACAAGATTCTGAGCGTTGGTGATAATATTTTACACCTGTATGCCCAATTTCTGTTTTCAAAGGAGCATGAGGAGTTGGTGGGAATATATGCTTCTCAGCTTGCAGGCCACCGTTGCATAGACCTTTTTGTTCACATGATGGAACTTAGGCTGCACAGCAGCGTACATGTCAAATACAAGATATTCCTTTCTGCTATGGAATATTTGCCATTTTCTTCGTTGGACAAATCAAAGGGTAGTTTTGAAGAGATTATTGAGAGAGTTTTGTTGAGATCTCGAGAGATCAAGATTGGCAAATATGATAACCTGTCAGATGTTGCAGAACAGCACAGACTGCAGAGTCTTGAAAAAGCTAAAGTCATCCAGTGGCTTTGCTTCACACCACCATCAACAATTACTGATGTCAAAGATGTTAGTAAAAAACTTCTTCTTCGAGCATTGGTACATAGCAATGTGCTCTTCAGGGAGTTTGCCTTGATTTCTATGTGGAGAGTACCAGCAATGCCTATAGGTGCCCACACAGCTCTTGGTTTTCTTGCTGAGCCCTTGAAACAACTAGCAGAGACTCTTGAGACCTCTGAGGATCATAATGTTTTTGAGGATCTGAGGGAGGTCGAAGAATGGCGTGAGTATTACTCCTGTGATGCAACCTACCGCAATTGGCTTAAAATTGAATTGGAGAATGCAGACGTTCCTGTCTCTGAATTATCACTAGAGGAAAAGGAAAGGGCTATTTCAGCAGCCAAGGAAACACTGACTGTCTCTCTTTCACTGCTAGAACGAAGAGAAACACAGTGGCTCGCTTCTACTGATAATATATATGAATCAGCTGAACCTGTTTTCCTTGAACTTCATGCAACTGCAATGCTCTGCCTGCCATCTGGAGATTGTTTGTGTCCAGATGCTACTGTATGCACCACACTGATGAGTGCCCTCTACGCTTCTGTTGGTGACGAGGTTGTCTCAAATAGACAGCTAATGGTGAAAGTCTCTATATCTTCAAGGGACAATTATTGCATTGATATTGTTCTTCGTTGCTTAGCAATATTTGGTGACGGACTCGGACCACATGATATCAATGGCGGTGGCATTCTTAGCACCATTCTGGCTGCTGGTTTTAAAGGTGAGCTTCCTCGGTTTCAGGCTGGAGTTACAATGGAAATATCTCGATTGGATGCTTGGTATTCCAATAAAGATGGCATCGTAGAGTTCCCTGCAACATACATTGTGAAGGGACTTTGTCGCAGGTGCTGTCTCCCAGAAGTCATTCTTCGTTGCATGCAAGTTTCTGTTTCTCTCATGGGATCAGGAGTCCAGCCAGATTCCCACGATAACTTGATTGAACTGGTTGGCAGTCCTGAAACTTGCTTTCTTGACTTGTTCAGTCAACAACAATTACAGGAGTTTTTATTGATGGAGAGGGAATACTCAATCTGCAAAATGGAGCATACACATGAATGA 3246 0.4291 MDDEMAMDSPFFDPQDLTPRDKFRRYRKRHLNSSASVEQDYSASKLSESGLFYDGHNIHSPTNAALILENIKQEVESLDADYLDEKSLYSSRKRLSADIAGVPGMDDGFDSVRYSLKACKQEGDSLGDDADNIFNLFASLFDSSLTGMMPIPDLILIFENECRNVSESIRYGLNTRHRVVEDKLMRQKAQLLLDEAATWSLLWFLYGKGKYLTEELSKEKILVKETSHVVACEFVVEDHIAQLCLRIVQWLEGLASKALELEAKVRGSHVGSYLPSSGVWHHTQRYLKKGISDRNLVHHLDFDAPTRENTNVLPDDKKQDESLLEDVWTLLRAGRLEEACGLCRSAGQPWRASSLCPFGGLNLFPSVEALMKNGKNRTLQAVEFESGIGHQWHLWKWASYCASEKIAELGGKYEAAVYAAQCSNLKRMLPLCTDWESACWAMAKSWLDVQVDLEVTRSLPGGVDQHRTFGDVIDRSPGQVDGSFDPSNGPENWPIQVLNQQPRQLSSLLQKLHSGEMIHETVMRQCKEQQRQIQMSLMLADIPHVLDLIWSWIAPLEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLREEMEAAFRDKILSVGDNILHLYAQFLFSKEHEELVGIYASQLAGHRCIDLFVHMMELRLHSSVHVKYKIFLSAMEYLPFSSLDKSKGSFEEIIERVLLRSREIKIGKYDNLSDVAEQHRLQSLEKAKVIQWLCFTPPSTITDVKDVSKKLLLRALVHSNVLFREFALISMWRVPAMPIGAHTALGFLAEPLKQLAETLETSEDHNVFEDLREVEEWREYYSCDATYRNWLKIELENADVPVSELSLEEKERAISAAKETLTVSLSLLERRETQWLASTDNIYESAEPVFLELHATAMLCLPSGDCLCPDATVCTTLMSALYASVGDEVVSNRQLMVKVSISSRDNYCIDIVLRCLAIFGDGLGPHDINGGGILSTILAAGFKGELPRFQAGVTMEISRLDAWYSNKDGIVEFPATYIVKGLCRRCCLPEVILRCMQVSVSLMGSGVQPDSHDNLIELVGSPETCFLDLFSQQQLQEFLLMEREYSICKMEHTHE 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00804 1081 Gene3D - 279 429 - -
Trre15g00804 1081 Pfam Nuclear pore protein 84 / 107 192 870 IPR007252 GO:0005643|GO:0017056
Trre15g00804 1081 Coils Coil 1080 1081 - -
Trre15g00804 1081 FunFam Nuclear pore complex protein 700 868 - -
Trre15g00804 1081 Gene3D - 701 898 - -
Trre15g00804 1081 PANTHER NUP107-RELATED 16 1078 IPR007252 GO:0005643|GO:0017056
Trre15g00804 1081 Coils Coil 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00804 Trre-Chr15 5931507 5947668 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00804 K14301 - gmx:100786552 1860.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00804 15 5931507 5947668 Trre15g00804 15 5931507 5947668 ECH