Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre15g00788 | ATGTCTTGGGCTGCTGCTGAAGATATCTACCTTTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTAAGAGATGGTAGAAAGCTTATGGGGACACTTCGCTCTTTTGATCAATTTGCCAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGCGACATTCCTCTAGGTCTGTATGTAATCCGTGGAGAGAATGTTGTTCTAATCGGTGAGATGGACTTAGAGAGGGAGGAACTTCCCCCACATATGACTCGTGTTCCTACGGAAGAAATCAGGAAGGCACAAAAAGTAGAAAGGGATGCTTCAGAACTGAAAGGGACTATGAGAAAAAGAATGGAATTCCTTGACTTGGACTAG | 387 | 0.4264 | MSWAAAEDIYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDLEREELPPHMTRVPTEEIRKAQKVERDASELKGTMRKRMEFLDLD | 128 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre15g00788 | 128 | FunFam | U6 snRNA-associated Sm-like protein LSm1 | 12 | 125 | - | - | |
| Trre15g00788 | 128 | SMART | Sm3 | 13 | 81 | IPR001163 | - | |
| Trre15g00788 | 128 | ProSiteProfiles | Sm domain profile. | 10 | 85 | IPR047575 | GO:0003723 | |
| Trre15g00788 | 128 | Pfam | LSM domain | 14 | 80 | IPR001163 | - | |
| Trre15g00788 | 128 | Gene3D | - | 12 | 125 | - | - | |
| Trre15g00788 | 128 | PANTHER | LSM1 | 8 | 122 | IPR044642 | - | |
| Trre15g00788 | 128 | SUPERFAMILY | Sm-like ribonucleoproteins | 13 | 83 | IPR010920 | - | |
| Trre15g00788 | 128 | CDD | LSm1 | 12 | 82 | IPR034104 | GO:0000956 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre15g00788 | Trre-Chr15 | 5824222 | 5826910 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre15g00788 | K12620 | - | rcu:8279030 | 232.646 |