Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00782 ATGAAACCCCCTTTTGTTGGATTCATCAGAATACTTGGCTTTCTTGTTTTTATCTCAGCTTCCTGTTCTTCTATTGATGAAAGCACGAAAATGCAGAAAACTTTAGCGATCATAAAACCGGATGGATTGCTTGGTAACTACACAGATGATATCAAGAGAACAGTTTTAGAATATGGTTTCAACATTATCAAGGAAAAGATTGTTCAACTTGATGACGCCACTGTGAAAAGATTTTATGCAGAGCACTCTTCAAAGAGCTTCTTTTCCAGCCTAGTTAAATACATGACAAGTGGACCAGTGTTAATCATGATTTTGGAAAAGAATAATGCTATTGCTGATTGGCGTGCTTTAATGGGACCTACCGATGCAAGCAAGGCTAAGATTACTCATCCTCACAGCATTAGAGCAAAATGTGGATTGGATACTGAAAAAAACTGTGTTCATGGTTCGGACTCTCCGAAATCTGCACAAAGAGAGATACTATTTTTCTTCGAAGAGCTCTCTGCAGATGTAATTACAGAACATGATGAATTGTAG 537 0.3762 MKPPFVGFIRILGFLVFISASCSSIDESTKMQKTLAIIKPDGLLGNYTDDIKRTVLEYGFNIIKEKIVQLDDATVKRFYAEHSSKSFFSSLVKYMTSGPVLIMILEKNNAIADWRALMGPTDASKAKITHPHSIRAKCGLDTEKNCVHGSDSPKSAQREILFFFEELSADVITEHDEL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00782 178 ProSitePatterns Nucleoside diphosphate kinases active site. 145 153 IPR023005 -
Trre15g00782 178 PRINTS Nucleoside diphosphate kinase signature 34 56 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g00782 178 PRINTS Nucleoside diphosphate kinase signature 98 115 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g00782 178 PRINTS Nucleoside diphosphate kinase signature 145 164 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g00782 178 PRINTS Nucleoside diphosphate kinase signature 78 97 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g00782 178 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 20 172 - -
Trre15g00782 178 SMART ndk_5 31 171 IPR034907 -
Trre15g00782 178 SUPERFAMILY Nucleoside diphosphate kinase, NDK 30 167 IPR036850 -
Trre15g00782 178 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Trre15g00782 178 Gene3D - 25 176 IPR036850 -
Trre15g00782 178 Pfam Nucleoside diphosphate kinase 32 166 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00782 Trre-Chr15 5772693 5775149 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00782 K20790 - gmx:100500470 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00782 15 5772693 5775149 Trre15g00782 15 5772693 5775149 ECH