Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00759 ATGGCGGTTTCAACTATAGCTTTATACGCGAGTCCACCGAGTAGTGTATGTTCAGCACCGTATCAGATTAATTCTCATGCTTATGATTTCGAATTTGGATCTAGATCTTCGTCTCCGGCGTCGACGGCGACGGCGTCAACGTCGGCGAAACCGGTGATTGGAGGATTATCGTGTTTGTTTTCATCACCGACGGTTGTGAAACATGTTCCGTTAGGTTCGAGTTTTTCCGGTGGAGGTGAAGAAGATGAATTGAAGGAACTGAGTAGTTCATTTTCATATTCATATTCTCCAAGTAAGTTTGGATCTTGGAAGAGGGATCATCAGATTCAGAGTCCTGTTTCTGTTTTTCAGTGTCCTGTTTCGTGTAGTAATAGCATGGGTACATCTCGGTCGGCGGCGGCGGGGAAGAGTAGTAGTGGTGGGTTGTTTGATGGGTTTGTGAGAAGTGCTTTGGGTTCTTCTTGTTTGGATTATGATTCTACCGGTGTTCGATTTCGCGGTGCTGGTGGTGATACTGATGGTGGTGTTGATGAATTGACTTTTAATTTGGAGGATACTTTTGTGGAAGGTTGCTTTGGATTTGAGTTTGAGCCTTATGCTAAGAAGTTGTTGATGAGTGCTCAGTTAAGACATAAGATCTTTTGTGATGAGTTTGTAATTAAGGCCTTTTGTGAAGCTGAGAAAGCACATAGAGGACAGATGCGAGCTAGTGGGGATCCGTATTTGCAGCATTGTTTGGAAACTGCTGTGTTGTTGGCTTTGATCGGTGCGAATTCGACTGTAGTTGCTGCAGGGCTTTTGCATGATTCACTTGATGATGCTTTTCTTACTTATGATTATATATTTGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAATTAAGTCACTTAAGCAAGCTGGCTCGAGACAATAATACAGCTAGCAAGTCTGTTGAAGCTGACCGCCTGCATACAATGTTCCTTGCCATGGCAGATGCAAGAGCTGTTCTTATTAAATTGGCAGATCGATTACATAATATGATGACACTAGATGCATTGCCGGTTGCGAAGCAGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTAGGAATATCTAACTGGAAGGAACAATTAGAAAACTTATGCTTTAAGCATCTCAACCCAGTGCAGCACAAGGAGCTTTCGTCAAAGCTTGTGGAATCGTATGATGATGCAATGATTGCTTCTGCAATTGAGAGATTAGAGCAAGCACTCAAAGATGAAGGCATTTCGTATCATGTCATTTCTGGCAGGCACAAGAGCTTGTATAGTGTTTATATCAAAATGTTGAAGAAAAAACTAACAATTGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGAGAAGGAAGAAGACTGTTACAAAGCCTTAAATGTTGTTCACCAGTTATGGTCCGAGGTGCCTGGAAAACTGAAAGATTACATAAGTTTCCCCAAGTTCAATGGGTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAAGTTCCTCTCGAAGTACAAGTTCGAACCAAAGATATGCATTTGCAAGCAGAATTTGGATTTGCTGCTCATTGGAGGTACAAGGAAGATCACTGTCAGCATTCTTCATATGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACATGGCAGTGCGAAGCAATGAGTAAAGATTCTACTTCTGTTGGATATGTCGATTCAATCAAGCCACCTTGCAAGTTCCCTTCACATGCTGATAATTGTCCATATTCTTACAAGCCTGATTGTGGGCAAGATGGGCCTGTGTTTGTTATCATGATTGAGAATGATAAGATGTCTGTTCAAGAATTTTGTGCAAACTCAACAGTACTAGATTTGTTGGAGAGAGTCGGGCGATCAAGCTGTAGGTTGACAACATATAGGTTCCCTCTGAAGGAAGAATTAAGGCCAAGGCTGAATCACAAGCCTGTAAGTGATCCAAATTGCAAGTTAAAGATGGGAGATGTGATCGAGCTTACACCGACCATACCTGACAAGTATCTGACAGAATATAGGGAGGAAATTCAAAGAATGTATGACCGCGGGCTAACTGTATCAAGCATGGGAACTACTGCTACTGCAAGCAGCATGGTTGGCACTAGTTAA 2169 0.4255 MAVSTIALYASPPSSVCSAPYQINSHAYDFEFGSRSSSPASTATASTSAKPVIGGLSCLFSSPTVVKHVPLGSSFSGGGEEDELKELSSSFSYSYSPSKFGSWKRDHQIQSPVSVFQCPVSCSNSMGTSRSAAAGKSSSGGLFDGFVRSALGSSCLDYDSTGVRFRGAGGDTDGGVDELTFNLEDTFVEGCFGFEFEPYAKKLLMSAQLRHKIFCDEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDSLDDAFLTYDYIFGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISNWKEQLENLCFKHLNPVQHKELSSKLVESYDDAMIASAIERLEQALKDEGISYHVISGRHKSLYSVYIKMLKKKLTIDDIHDIYGLRLIVEKEEDCYKALNVVHQLWSEVPGKLKDYISFPKFNGYQSLHTVVMGEGKVPLEVQVRTKDMHLQAEFGFAAHWRYKEDHCQHSSYVLQMVEWARWVVTWQCEAMSKDSTSVGYVDSIKPPCKFPSHADNCPYSYKPDCGQDGPVFVIMIENDKMSVQEFCANSTVLDLLERVGRSSCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVIELTPTIPDKYLTEYREEIQRMYDRGLTVSSMGTTATASSMVGTS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00759 722 Pfam Region found in RelA / SpoT proteins 435 544 IPR007685 GO:0015969
Trre15g00759 722 SUPERFAMILY HD-domain/PDEase-like 201 392 - -
Trre15g00759 722 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 122 686 - -
Trre15g00759 722 SMART hd_13 237 354 IPR003607 -
Trre15g00759 722 FunFam GTP pyrophosphokinase RelA 202 392 - -
Trre15g00759 722 ProSiteProfiles HD domain profile. 241 345 IPR006674 -
Trre15g00759 722 Gene3D Hypothetical protein af1432 200 392 - -
Trre15g00759 722 Pfam HD domain 226 376 - -
Trre15g00759 722 ProSiteProfiles S4 RNA-binding domain profile. 659 696 - -
Trre15g00759 722 SMART RelA_SpoT_2 435 545 IPR007685 GO:0015969
Trre15g00759 722 SUPERFAMILY Nucleotidyltransferase 382 571 IPR043519 -
Trre15g00759 722 CDD NT_Rel-Spo_like 415 533 IPR007685 GO:0015969
Trre15g00759 722 Gene3D Beta Polymerase, domain 2 395 525 IPR043519 -
Trre15g00759 722 FunFam GTP pyrophosphokinase RelA 393 525 - -
Trre15g00759 722 CDD HDc 239 367 IPR003607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00759 Trre-Chr15 5580910 5584288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00759 236 542 EF-hand Containing Proteins AT3G17470 30.606 2.70e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00759 K00951 - gmx:100787301 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00759 15 5580910 5584288 Trre15g00759 15 5580910 5584288 ECH