Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00714 ATGGCTGCTGAATCTCCAACTTCTGTTCGTAAAGTGGTTGTTCATCTCAGAGCCACCGGTGATGCTCCTATTCTCAAACAATCCAAATTCAAGATTGCAGGAACCGATAAATTTGCAAAAGTGATAGAGTTTCTTCGCAGACAGCTCCACAGGGAGACATTGTTTGTTTATGTCAACAGTGCTTTTTCACCGAACCCTGATGAACTCGTCGTTGATTTGTATAATAATTTTGGTTTTGATGGAAAACTGGTTGTGAACTACGCTTGTTCTATGGCATGGGGCTAA 285 0.414 MAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIEFLRRQLHRETLFVYVNSAFSPNPDELVVDLYNNFGFDGKLVVNYACSMAWG 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00714 94 CDD Ubl_ATG12 11 93 - -
Trre15g00714 94 PANTHER AUTOPHAGY PROTEIN 12 3 94 IPR007242 GO:0000045|GO:0005737
Trre15g00714 94 Pfam Ubiquitin-like autophagy protein Apg12 11 94 IPR007242 GO:0000045|GO:0005737
Trre15g00714 94 SUPERFAMILY Ubiquitin-like 10 93 IPR029071 -
Trre15g00714 94 FunFam Ubiquitin-like protein ATG12 5 94 - -
Trre15g00714 94 Gene3D - 5 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00714 Trre-Chr15 5314262 5318795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00714 K08336 - tcc:18596213 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00714 15 5314262 5318795 Trre15g00714 15 5314262 5318795 ECH