Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00712 ATGGCGGAAAACGTAATCGGTTCACCACCTTCAACAATGGAAAACCCCTCTTCTTCAAACCCTACAATTCCATCACCTTCACCAATTTCACAACAACAACAACAACAATCTCCTTCAATTCACATGTCATCATCATCACCGTCTCTATCTCAAGATCAACAACAACAACAACAACATTCACAGTTACATGGTATCAATAACATTAACCCTAACCCTAATTCTAATGTTTCCAATTTTCAACTTCAACAATCACTTCAACGTTCTCCTTCTATGTCTCGCCTTAATCAAATTCAACCTCAGCAGCAGCAGCAGCAGCAACAGCAGCAAGTTGTGAGGCAGCAACTTTATGGTGGGCAGATGAATTTTGGTGGATCAGCTGCTGTTTCTGCTCAGCAACAGCAATTAAGCAGTGGTGGCGGTGTTGGCATCGGCGGTAATGCTTCTAATTTGTCACGATCGGCATTAATCGGACAGAGTGCTCATTTCCCCATGTTGTCTGGTGCTGGAGCAGCGCAGTTTAACCTATTAGCCTCGCCGAGGCAGAAAGGTGGTTTGGTGCAATCATCACAATTTTCTTCGGGTAATTCTGCTGGACAATCACTGCAAGGAATGCAACAAGCAATTGGGATGATGGGGTCGTCCAATCTAGCCTCTCAAATGAGAACTAATGGAGCTCTTTATGCTCAGCAGCAGCAGCTTCGAATGACTCCGGCCCAAATTAGACAGCAGCTCTCACAGCAGGCTTCACTTAGCAATCAACAGGTTCAAGGTTTACCAAGGTCATCGTCCCTTGCTTTTATGAATTCTCAGTTGTCTGGGTTGTCACAGAATGGGCAGCCTGCCATGATACATAATTCTTTAACACAGAATCAGTGGCTCAAGCAAATGCCAGCAATGTCTGGCCCTGCCTCCCCATTGCGTCTTCAACAACATCAGAGGCAGCAGCAGCTGGCTTCATCTGGTCAACTGCAACAAAACTCTATGACCCTAAACCAACAGCAATTGTCCCAGTTGTTGCAGCAGAAGTCCATGGGACAATCTCAGCTTCATCAGCAGCAGCCATCCTCTCAGCAGCAGCAGCAACAACAACTTTTACAGCAGCAGCAACAATCACAACTACAAGCATCTGTTCATCAACAGCAACAACTGCAGTCTCCGAGGATGACAGGACCTACAGGTCAAAAGTCACTAAGTTTAACAGGATCGCAGCCAGATGCTACTGCATCTGGCACGACCACACCCGGCGGAAGTTCAAGTCAAGGAACCGAAGCAGCTACAAACCAAGTACTTGGAAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACATGGTAAGCTGGACCCTGAAGTTATAGATCATCTTTTAGAGCTTGCCGATGACTTCATTGATTCTGTAACTACACATGGTTGCATTTTGGCAAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTGGCAGTTCCAGGATATTCAAGTGAAGAGAAGAAGTACCAGAGTAGACCTTTGTTCAATGACCTTCACAAGAGGCGGCTAGATGCGGTTCGCACATTGATGGAATCTTCTAAACTCCCGGAATCTAGTATTAACAATTCTAAAGATATCAGTAGACAGGGTCATCCTAACCCTGCAGCTTCCCATCATCTAATGAGACCCCTGAGTTCAGACCAGTTGGTTTCTCATTCAAGTACTTCTCAAATACTACAGCAGATGACGAGATTTTAA 1761 0.448 MAENVIGSPPSTMENPSSSNPTIPSPSPISQQQQQQSPSIHMSSSSPSLSQDQQQQQQHSQLHGINNINPNPNSNVSNFQLQQSLQRSPSMSRLNQIQPQQQQQQQQQQVVRQQLYGGQMNFGGSAAVSAQQQQLSSGGGVGIGGNASNLSRSALIGQSAHFPMLSGAGAAQFNLLASPRQKGGLVQSSQFSSGNSAGQSLQGMQQAIGMMGSSNLASQMRTNGALYAQQQQLRMTPAQIRQQLSQQASLSNQQVQGLPRSSSLAFMNSQLSGLSQNGQPAMIHNSLTQNQWLKQMPAMSGPASPLRLQQHQRQQQLASSGQLQQNSMTLNQQQLSQLLQQKSMGQSQLHQQQPSSQQQQQQQLLQQQQQSQLQASVHQQQQLQSPRMTGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEAATNQVLGKRKIQDLVAQVDPHGKLDPEVIDHLLELADDFIDSVTTHGCILAKHRKSSTLESKDLLLHLEKNWDLAVPGYSSEEKKYQSRPLFNDLHKRRLDAVRTLMESSKLPESSINNSKDISRQGHPNPAASHHLMRPLSSDQLVSHSSTSQILQQMTRF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00712 586 MobiDBLite consensus disorder prediction 8 105 - -
Trre15g00712 586 CDD TAF12 430 498 IPR003228 GO:0005669|GO:0006352
Trre15g00712 586 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 9 550 IPR037794 GO:0000124|GO:0005669|GO:0046695
Trre15g00712 586 MobiDBLite consensus disorder prediction 297 324 - -
Trre15g00712 586 MobiDBLite consensus disorder prediction 1 105 - -
Trre15g00712 586 MobiDBLite consensus disorder prediction 376 429 - -
Trre15g00712 586 MobiDBLite consensus disorder prediction 305 324 - -
Trre15g00712 586 MobiDBLite consensus disorder prediction 339 364 - -
Trre15g00712 586 Pfam Transcription initiation factor TFIID subunit A 431 498 IPR003228 GO:0005669|GO:0006352
Trre15g00712 586 MobiDBLite consensus disorder prediction 533 551 - -
Trre15g00712 586 Gene3D Histone, subunit A 425 499 IPR009072 GO:0046982
Trre15g00712 586 MobiDBLite consensus disorder prediction 532 560 - -
Trre15g00712 586 FunFam Transcription initiation factor TFIID subunit 12 425 500 - -
Trre15g00712 586 SUPERFAMILY Histone-fold 428 499 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00712 Trre-Chr15 5295934 5307281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00712 K03126 - mtr:11423979 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00712 15 5295934 5307281 Trre15g00712 15 5295934 5307281 ECH