Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00707 ATGGGTATCATTGAAAAGATCAAAGAAATTGAAGCCGAGATGGCTCGGACTCAGAAAAACAAAGCCACTGAGTATCATCTTGGGCAGCTCAAGGCTAAGATAGCAAAACTAAGGACACAATTATTGGAGCCTCCAAAGGGTTCTAGTGGTGGTGGAGACGGATTTGAAGTTACGAAATTTGGCCATGGACGTGTTTCACTGATCGGGTTTCCAAGTGTGGGAAAGTCAACGCTTTTGACATTATTAACGGGCACTCATTCAGAAGCTGCATCTTATGAGTTCACAACATTGACTTGCATTCCTGGGATTATACACTACAATGATACTAAAATTCAGTTGCTTGATCTTCCTGGAATTATTGAGGGTGCTTCTGAAGGCAAGGGACGTGGTAGACAGGTTATTGCTGTTGCTAAATCTTCAGACATAGTATTGATGGTTCTTGATGCCTCCAAAAGTGAGGGTCATAGACAAATATTGACTAAGGAGCTGGAAGCTGTCGGTTTGCGGTTAAACAAGAGACCACCTCAGATATATTTCAAAAAGAAAAAGACGGGGGGCATTTCGTTCAACAGCACTATGCCTTTAACTCACGTGGATGAGAAGCTTTGTTATCAGATTCTACACGAGTACAAAATTCACAATGCAGAGATCCTTTTCCGTGAGGATGCGACAGTGGATGATTTCATAGATGTCATTGAAGGAAACCGTAAATACATGAAGTGTGTATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTGGACAGATTATCCCGTCAACCTAATTCTGTTGTTATTAGCTGCAATTTGAAGCTGAATTTAGACAGACTACTTGCAAGGATGTGGGATGAAATGGGTTTGGTTGAGTTTATACAAAACCACAAGGCCAGCAACCTGATTTTGGTGATCCAGTGGTTCTTTCAGCTGATAGAGGTGGCTGCAGTGCACTATCCACAACATTGTGGCCTTAGTCATGTTCTTAATGATGAGGACGTTGTTCAGATTGTTAAGAAAAAGGAAACTGACGAGGGAGGAAGGGGTCGATTCAAGTCGCATTCTGACGCTCCTGCTCGGATATCAGACAGACAGAAGAAGGCTCCACTAAAACAGTAA 1119 0.42 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKFGHGRVSLIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTMPLTHVDEKLCYQILHEYKIHNAEILFREDATVDDFIDVIEGNRKYMKCVYVYNKIDVVGIDDVDRLSRQPNSVVISCNLKLNLDRLLARMWDEMGLVEFIQNHKASNLILVIQWFFQLIEVAAVHYPQHCGLSHVLNDEDVVQIVKKKETDEGGRGRFKSHSDAPARISDRQKKAPLKQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00707 372 NCBIfam small GTP-binding protein domain 64 213 IPR005225 GO:0005525
Trre15g00707 372 PRINTS GTP1/OBG GTP-binding protein family signature 130 148 IPR006073 GO:0005525
Trre15g00707 372 PRINTS GTP1/OBG GTP-binding protein family signature 86 104 IPR006073 GO:0005525
Trre15g00707 372 PRINTS GTP1/OBG GTP-binding protein family signature 65 85 IPR006073 GO:0005525
Trre15g00707 372 PRINTS GTP1/OBG GTP-binding protein family signature 113 128 IPR006073 GO:0005525
Trre15g00707 372 Pfam TGS domain 319 339 IPR004095 -
Trre15g00707 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 291 IPR027417 -
Trre15g00707 372 Pfam C-terminal region of MMR_HSR1 domain 184 289 IPR031662 -
Trre15g00707 372 Gene3D - 307 346 IPR012675 -
Trre15g00707 372 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 63 288 IPR031167 GO:0005525
Trre15g00707 372 MobiDBLite consensus disorder prediction 341 372 - -
Trre15g00707 372 ProSitePatterns GTP1/OBG family signature. 115 128 IPR006074 GO:0005525
Trre15g00707 372 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 1 295 IPR045001 GO:0003924|GO:0005525
Trre15g00707 372 Gene3D - 1 91 - -
Trre15g00707 372 Gene3D - 132 237 - -
Trre15g00707 372 FunFam Developmentally-regulated GTP-binding protein 67 188 - -
Trre15g00707 372 Pfam 50S ribosome-binding GTPase 64 180 IPR006073 GO:0005525
Trre15g00707 372 CDD DRG 64 290 IPR045001 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00707 Trre-Chr15 5257748 5262846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00707 K06944 - gmx:100305672 639.802