Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00686 ATGAATTTGCAACAAGTTGGGCAGCCTAAATCATCTAATGGATATGGTCGTCGGAAATCTGATAAAGATGGGGCATCTAAATCTGATAATAAGATTGCCCCTGGAAAATCAAATGCTGGCAGATTAGCGAGTACAGGTGCAGTGACAGGTAGTAAAGGCGGTAGTTATGAGAGTCCTTCGCGTGATCGACTAGTCTATTTAACAACATGCCTTATTGGTCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCTACAAATACTGAGCAAGATTTTGGAGTCATTTTGAAAATGGCTTGCTTGACAAAGGACGGCTCTTCGCAAGGGCAGAGCTCTGGTGTTGAATTTGTCAGCAAAGCACCTTCTAAGACTTTAATTATACCTGGCAAAGAACTTGTACAAGTCATAGCAAAGGATGTTGCTGTTTCTAGAGGTGACCTAGCCAGTGAATCCAACTATGATGTGCATCAGGAGATCATGGTTGATTCAGTAATATCTCAACCTCGTCATGTTGAGACAGGAAGAGAATTACACCGATGGGTACCTGATGAGGATGTTCCACAATGCCCTGAGCTGGACAATATCTTTGATGGCTCTTGGAATAGGGGATGGGATCAGTTTGAAACAAATAAAATGTTGTTTGGGGTGAAAAGCACATTTGATGAGGAACTCTATACAACAAAGCTTGAAAAAGGGCCTCAGATGAGAGAATTGGAATTGCAAGCTCTAAGAATAGCAAGAGAAATTGAGGGCGAGGAAACCCAAGATCTTCATCTAGCTGAGGAAAGAGGTCTTTACCCTGATGACTTCGATGTTGATGAAGAGACCAGATACTCTTCTGTATACAGGGGTAAAGGTGTAGACGATGAATATGACGAAAATGAAGACAATTTATTGGATTCACAAAATTCTGAAACGTTTGGTGATATATCTGATTCAGTCATAAAGAGACCAGGAAAGGTAAGTGGTGGGAAAGGCAAAAATGGAGCTCAAACATGGTCAAATTTCTCCTTTATGTCATCTCAGTCAAAAACTAGTGGGGACTTATGCCACCCTGGTTCTTATGACCACGCTAAGCAGTTACCATTGGAACTCCCTGGCCAAAGTTACTCATTTTCAGATGGGGAGAGCAGGATTCAGGATAATTCAGTTTGTGATCTACACGGAGCCAATGGTAACACCAAGGAAGAAAATCAGAAGCAAGCTGAGGATGTCCAGCCGTTGAAATATGAGGATTTACACTCAGCACTCAACTTGAAGAAAGATGACTCTGATAAAGGGGGATTATCTTCTACTAATGCCCCCTCCTATGCCTCATCTACTCATATTTCATCGAAGATTGATGAAAAGTCTGGATCACATGGAGAATTGACTGGGGGATCAGATTCTGGCAAAGCAAGTTGGGAAACGAAGCCCTTAAGTTCACGGGGAAGATCAGAAACTCGTGTATCATCTGGTTCAGATTGTGTAGCAGGTGTGGCAACATATTCTGGTCCTAGTCTATCTCCAAGTTCTTCACTCGGTTCACTGTCTTCCGAAAAATCAACTCTGAATCCCTATGCGAAGGAATTTAAGCTGAACCCTAATGCTAAGAGTTTTGTTCCGTCTCAAGCATCTGTTAGGCCTCGCTCCCCAGTGTCTGATGGTTCCTTCTATTTCCCAGCTAACGTATCTACTGTACCGAGTATGCCAACCATGCCAATGGGTGTTGGAGTTGGAACTTCTTTTGCTGGGCAACAGCCTATCATGTATAATCCACAGGCAGCACAAATGCCACCCCAACCATATTTTCATCAGAATGGGCCACAGTATGGACAACTTCATGGTCATCCTAGACAAGTTCTATTCATGCCTGGTGGTTACCTACCTGAGACACCATATAAGGGACGGAACTATTAA 1920 0.4276 MNLQQVGQPKSSNGYGRRKSDKDGASKSDNKIAPGKSNAGRLASTGAVTGSKGGSYESPSRDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEQDFGVILKMACLTKDGSSQGQSSGVEFVSKAPSKTLIIPGKELVQVIAKDVAVSRGDLASESNYDVHQEIMVDSVISQPRHVETGRELHRWVPDEDVPQCPELDNIFDGSWNRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPQMRELELQALRIAREIEGEETQDLHLAEERGLYPDDFDVDEETRYSSVYRGKGVDDEYDENEDNLLDSQNSETFGDISDSVIKRPGKVSGGKGKNGAQTWSNFSFMSSQSKTSGDLCHPGSYDHAKQLPLELPGQSYSFSDGESRIQDNSVCDLHGANGNTKEENQKQAEDVQPLKYEDLHSALNLKKDDSDKGGLSSTNAPSYASSTHISSKIDEKSGSHGELTGGSDSGKASWETKPLSSRGRSETRVSSGSDCVAGVATYSGPSLSPSSSLGSLSSEKSTLNPYAKEFKLNPNAKSFVPSQASVRPRSPVSDGSFYFPANVSTVPSMPTMPMGVGVGTSFAGQQPIMYNPQAAQMPPQPYFHQNGPQYGQLHGHPRQVLFMPGGYLPETPYKGRNY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00686 639 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Trre15g00686 639 MobiDBLite consensus disorder prediction 291 340 - -
Trre15g00686 639 Coils Coil 242 262 - -
Trre15g00686 639 PANTHER ATAXIN 2-RELATED 34 628 IPR045117 GO:0003723
Trre15g00686 639 MobiDBLite consensus disorder prediction 435 453 - -
Trre15g00686 639 SMART LsmAD_2 221 291 IPR009604 -
Trre15g00686 639 MobiDBLite consensus disorder prediction 389 411 - -
Trre15g00686 639 MobiDBLite consensus disorder prediction 426 493 - -
Trre15g00686 639 MobiDBLite consensus disorder prediction 42 56 - -
Trre15g00686 639 MobiDBLite consensus disorder prediction 1 58 - -
Trre15g00686 639 MobiDBLite consensus disorder prediction 15 29 - -
Trre15g00686 639 Pfam LsmAD domain 221 290 IPR009604 -
Trre15g00686 639 MobiDBLite consensus disorder prediction 389 403 - -
Trre15g00686 639 MobiDBLite consensus disorder prediction 463 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00686 Trre-Chr15 5082448 5087832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00686 - - gmx:100796073 855.514