Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00666 ATGGCTTCCCATTTACTCAATCACTCCAAAAAGTTAAGAAATGCTTCGAGCTTGTTACACCACGACCGCGCTCTTTTGGTTCGTTGGTTTTGCAGCGATGTTCAACCTTCATCTATCAACAGAAATCGTGATGTTCGGAAAACTCAATTACAAGATTGCAAGTCTTCAGCGAGAAACCGTGTCTCTGAATCAACTCCCAACTTTACTAAGAGAAACATGTCCACCATGAAAAGGGGTTACATGAGGGAGTCGTTGTTGAATGGAGAGATTTCACAAAATTCACGGGTTCTATCAAGGAGAGGCTATGCATCAGCTTCAGATCTCCCTCCACACCAGGAAATTGGAATGCCTTCTCTCTCGCCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCTCCCGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACAGTTGAAATGGAGTGCATGGAGGAAGGTTATCTGGCCAAAATAGTACGTAAGGAGGGAGAAAAAGAAATCAAAGTTGGTGAGGTAATTGCCGTAACTGTTGAAGATGAGGAGGACATTGCAAAATTTAAAGATTACCAACCTTCAGCATCTGAATCTAGTGCCCCCCCTGCCAAAGAAACATCTGCCCCACCTCCCCCAAAGAAAGAGGCGGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGCTTCCAAACCCAGTGCACCACCTTCATCTGGAGATCGCATATTTGCTAGTCCCCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTGGATCTCTCCAGCATTAAAGGAACTGGACATGATGGACTCATTGTCAAGGGTGACATTGACGATTACTTGGCTTCTGGTGCTAAAGAAGCTTCAGCACCCTCAAAGGCCAAGGCTGCTGCAACTGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATAAGGAAGGTCACAGCTTCACGTTTGTTGCTATCAAAACAAACTATTCCTCATTACTATTTGACAGTAGATACATGTGTTGACAAACTCATGAGCTTGCGTTCCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGTTCCCGCATATCAGTAAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAGTGTAACAGTTCATGGACAAATGACTATATTCGCCAGTATCATAATGTGAATATTAATGTTGCCGTGCAGACTGATCACGGACTCTTTGTTCCAGTTGTCAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAAGTCAAACAATTGGCAAAAAGAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGTACATTTACAGTGTCCAACTTGGGAGGGCCATTTTGTGTCAAACAGTTCTGTGCCATTGTCAATCCTCCTCAATCAGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCGTTCCAGGTTCGGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGGCTGTGACCCTAAGTTGTGATCATCGTGTAATAGATGGGGCGATTGGTGCGGAATGGTTAAAAGCATTCAAAGGCTATATTGAGAATCCAGAAACCATGTTGTTGTAA 1626 0.4434 MASHLLNHSKKLRNASSLLHHDRALLVRWFCSDVQPSSINRNRDVRKTQLQDCKSSARNRVSESTPNFTKRNMSTMKRGYMRESLLNGEISQNSRVLSRRGYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVRKEGEKEIKVGEVIAVTVEDEEDIAKFKDYQPSASESSAPPAKETSAPPPPKKEAVEEPAREPEPKASKPSAPPSSGDRIFASPLARKLAEEKNVDLSSIKGTGHDGLIVKGDIDDYLASGAKEASAPSKAKAAATDAALDYTDIPVSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLMSLRSQLNSLQEASGGSRISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNINVAVQTDHGLFVPVVRDADKKGLSTIGEEVKQLAKRAKENSLKPQDYEGGTFTVSNLGGPFCVKQFCAIVNPPQSGILAVGSAERRVVPGSGAEEFKFASFMAVTLSCDHRVIDGAIGAEWLKAFKGYIENPETMLL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00666 541 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 76 541 IPR045257 GO:0006086|GO:0045254
Trre15g00666 541 ProSiteProfiles Biotinyl/lipoyl domain profile. 111 187 IPR000089 -
Trre15g00666 541 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 295 539 - -
Trre15g00666 541 MobiDBLite consensus disorder prediction 219 234 - -
Trre15g00666 541 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 243 288 IPR036625 GO:0016746
Trre15g00666 541 CDD lipoyl_domain 112 185 - -
Trre15g00666 541 Gene3D - 238 291 IPR036625 GO:0016746
Trre15g00666 541 SUPERFAMILY Single hybrid motif 110 205 IPR011053 -
Trre15g00666 541 NCBIfam pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 113 541 IPR006257 GO:0004742|GO:0006090|GO:0045254
Trre15g00666 541 SUPERFAMILY CoA-dependent acyltransferases 310 541 - -
Trre15g00666 541 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 250 287 IPR004167 GO:0016746
Trre15g00666 541 Gene3D - 106 212 - -
Trre15g00666 541 MobiDBLite consensus disorder prediction 199 249 - -
Trre15g00666 541 Pfam e3 binding domain 249 283 IPR004167 GO:0016746
Trre15g00666 541 Gene3D - 294 539 IPR023213 -
Trre15g00666 541 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 107 211 - -
Trre15g00666 541 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 136 165 IPR003016 -
Trre15g00666 541 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 310 541 IPR001078 GO:0016746
Trre15g00666 541 Pfam Biotin-requiring enzyme 113 185 IPR000089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00666 Trre-Chr15 4898838 4906282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00666 2 541 Acyl Lipid Metabolism Gene Families AT1G54220 68.315 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00666 K00627 - gmx:100778218 801.586