Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00636 ATGGCATCCAACGGCTTGTGTCCTTCAATTAAAAACATTCTTCTTTTAGATTCGGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAGTTCAAAATTAGCTTTTGAGAAGTTTGTGTTCACCAAGACTGTTAAGACAAATGCGCGGACAGAAGCTGAGATAACACTACTCGAGAACAATATCATTGTTTACAAATTTGTGCAAGATTTGCATTTCTTTGTCACTGGTGGTGATGATGAGAATGAGCTCATTTTGTCATCTGTTCTTCAAGGCTTCTTTGATGCAGTCACTCTTTTGCTAAGGAACAATGTTGACAAAAGTGAGGCACTTGAGAACTTGGATCTCATTCTTTTATGCCTTGACGAGATTGTTGATGGAGGGATTATACTTGAAACAAATGGACCTCTTATCGCCGAAAAAGTGACCTCCCATAACATGGATGCTGATGCTCCCTTATCAGAACAGACACTAACTCAGGCATGGGCTACAGCCAGAGACACTTTCACAAGAACTCTTTTAACATGA 543 0.4052 MASNGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTKTVKTNARTEAEITLLENNIIVYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLRNNVDKSEALENLDLILLCLDEIVDGGIILETNGPLIAEKVTSHNMDADAPLSEQTLTQAWATARDTFTRTLLT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00636 180 Pfam Clathrin adaptor complex small chain 10 151 IPR022775 -
Trre15g00636 180 CDD Zeta-COP 11 146 - -
Trre15g00636 180 Gene3D - 2 150 - -
Trre15g00636 180 SUPERFAMILY SNARE-like 10 150 IPR011012 -
Trre15g00636 180 PANTHER ZETA-COAT PROTEIN 6 179 IPR039652 GO:0006890|GO:0030126
Trre15g00636 180 FunFam Coatomer subunit zeta-2 4 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00636 Trre-Chr15 4649791 4653301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00636 K20472 - gmx:100775726 317.775