Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00625 ATGAAGAGGTCTAAAAGTAAAAAGACAACTTTGGCTACTCAAAATGTGTATGATTGTGTTACGACGGGACTCGAGGACCGACTTGGTGACATGCCAGATTGCATTCTTCATCATATTTTGTCGTTTATGGAGACAAGAGATGCAATTCGAACTTGTGCTTTATCGAAAAGGTGGAGATATATTTGGACTTCAATTCCCTGCTTGTACTTCAACAGCAAATCATTCACACGGTTGGTTGATTTCAAGAAGTTTGTGTTGTGGGTTCTATCCCATCGCGATAATTCTCATGTCAAAGTTCTCATTTACTATCGCTTTGGGGTAGATTACGCGACAGATCAGTATCTTTTCAATAAGGTTATTGAATATGCAGCATTACATGGTGTCGAAGAAATCAGAATTAATCTTCGGGCAAAAACCTCTGGCTGTCCGCCAATTGAAATTCCTTTGCCTCTTTTCACTTGCCAATCGTTGAAAAGGCTCGAGTTAAAAGATTGCCATCCTACAAATATCTCATCTCCTTTTGGTTGCAAATCATTGGACACATTGCACCTCGAACATTTTTCAATGTTTCCTACTGCAGCCGACTTTTCAAATCCATTTGCAAGTTTGTCCGAACTTTTTGGTTTCACAACATTGACAACTTTGCACCTAAATAACTTCGCCCTATGTTATACGGGAATGGACTGTCTGGATCCATTTGCTAAATGTGTCAATTTGAAGATTTTGCAATTAAGTGAAATGTCCTTTAAGTCAGATTTGAGTCCTAAGGATTTTGTGATATCCGCTCCCAAACTCAGTAACTTGAGTTTAATTTGCAACCGTTTTAGATGTAAGATCGTAGTTGCTTCACCAAAGCTTCTCAGTTTCACTTACTTGTATTCCACACCTTGTGCCTTCTTCGAGTATAGTCTTCCTTCTTTGGATGGCTTGATCATTGATATTCATGAATTACCTGAACCTGTTGAAAAATCTCATCGGAATAAAAGAGAGGAGACTTTACATGGTTTAATCAATATGTTACGGGGACATCATAAGGCTGAAGCTGTTAAACTATCCTTCTGTACAGTTGCGGTTACTTGTGGGGCTGCAGCCTTAGAAAAGCCGGAATGTTTGTCTTATAGTAAATGGAAGTCATTGGACTTCGGAGTGGGGTCAACATATAAAATCTTCATCAACAAACTTGACCATATAACTGCCTACTTCCGCAATTGTTCTCAGCATGTAGACTTTGAGATTGTGAATATTTAG 1248 0.3878 MKRSKSKKTTLATQNVYDCVTTGLEDRLGDMPDCILHHILSFMETRDAIRTCALSKRWRYIWTSIPCLYFNSKSFTRLVDFKKFVLWVLSHRDNSHVKVLIYYRFGVDYATDQYLFNKVIEYAALHGVEEIRINLRAKTSGCPPIEIPLPLFTCQSLKRLELKDCHPTNISSPFGCKSLDTLHLEHFSMFPTAADFSNPFASLSELFGFTTLTTLHLNNFALCYTGMDCLDPFAKCVNLKILQLSEMSFKSDLSPKDFVISAPKLSNLSLICNRFRCKIVVASPKLLSFTYLYSTPCAFFEYSLPSLDGLIIDIHELPEPVEKSHRNKREETLHGLINMLRGHHKAEAVKLSFCTVAVTCGAAALEKPECLSYSKWKSLDFGVGSTYKIFINKLDHITAYFRNCSQHVDFEIVNI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00625 415 PANTHER OS11G0201299 PROTEIN 25 379 - -
Trre15g00625 415 SUPERFAMILY RNI-like 140 297 - -
Trre15g00625 415 ProSiteProfiles F-box domain profile. 25 78 IPR001810 GO:0005515
Trre15g00625 415 SUPERFAMILY F-box domain 26 77 IPR036047 GO:0005515
Trre15g00625 415 Gene3D - 21 68 - -
Trre15g00625 415 Pfam F-box domain 30 66 IPR001810 GO:0005515
Trre15g00625 415 SMART fbox_2 31 72 IPR001810 GO:0005515
Trre15g00625 415 CDD F-box_AtFBL13-like 28 63 - -
Trre15g00625 415 Gene3D Ribonuclease Inhibitor 118 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00625 Trre-Chr15 4532594 4533983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00625 26 189 EF-hand Containing Proteins AT5G41840 26.486 3.11e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00625 - - vun:114167379 660.988