Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00619 ATGTATCGATTTGCTTCCAAATTAGCTTCATCTATAGCTTCTTCCACCCCAAAGAACAAGAACCTCGTGTATAATGGGGTATTGTTAAGAAGAAATTATGTGGCGAAAGATATAAACTTTGGAGTTGGGGCTCGTGCTGCTATGCTTCAAGGTGTTTCTGAGGTTGCTGAAGCTGTTAAAGTTACCATGGGACCCAAGGGTCGAAATGTGATAATTGAGAAAAGTCACAGGAGTCCAAGGGTCACGAAGGATGGTGTGACTGTAGCCAAAAGTATCAAATTTAAAGACAAAGCAAAAAATGTTGGTGCTGAATTGATCAAACAGGTCGCCAAGGCTACCAACACTGCCGCAGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCGTAGAAGGATGCAAATCAATTGCTGCTGGTGTAAATGTCATGGACTTGCGTAGTGGAATAAATAAAGCAGTTGATGCTGTAATTAAGGATTTAAAAAGTAGAGCAGTAATGATAAGTACACCAGAAGAGATAACCCAGGTTGGTACTATATCTGCAAATGGAGAGCGTGATATTGGAGAATTAATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACCGTTGCAGATGGGAACACTCTGGATAATGAGTTGGAAGTTGTAGAAGGAATGAAATTAAGTAGAGGCTACATATCTCCATATTTTATTACTGATCAGAAGACCCAGAAATGTGAATTGGAGAATCCCTTTATCCTCATCCATGACAAGAAAATTTCAGACATGAATTCAGTTTTGAAAGTATTGGAGCTGTCAGTAGTGAACAAAAGACCACTCCTAGTTGTTGCGGAAGATGTTGATAGTGATGCATTGGCTATGCTCATACTTAACAAGCATCGTGCTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAGTCTAGATGATCTTGCAATTCTTACCGGAGGAGAGGTCATCACAGAAGAGCGTGGCATAACTCTTGACAAAGTTCGGCCTGAAATGCTTGGCACTGCAAAAAAGATTACTGTCTCCATTGATGACACTATTGTTCTACATGGTGGTGGGGATAAGAAGTTTATTGAAGAGAGATGTACACAGCTGAGGGAAGCCATGGAGAAGAGTTCTGCAACATTCGATAAAGAAAAGGCACAAGAACGGCTATCAAAACTCTCTGGCGGTGTCGCTGTTTTCAAAGTTGGTGGGGCTAGCGAGGCAGAAGTTGGCGAAAGAAAAGATAGGGTAACAGATGCTTTAAATGCAACTAGAGCAGCTGTGGAGGAGGGTATTGTTCCAGGTGGTGGAGTTGCTCTCTTATATGCTAGCAAAGTCTTGGAGAACCTTGAAACTAAAAATGAGGATGAGAGAAGAGGAGTACAGATTATTCAGAATGCACTTAAGGCACCAACATATACAATAGCTTCAAATGCTGGTTATGATGGTACTTTAGTTCACAGCAAATTGTTGGAACAAGATAATCTTAATTTGGGTTTCGATGCTGCTAAAGGCACCTACGTTGATATGGTGAAGGCTGGAATTATAGACCCTGTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCGTTGCTATTGACGACAACCGAGGCATCTATTGTGGAAAGTTTGAATGACAAAAATAAACCTCCCCAAAGAGTGCCAGATATGGATGATTTGGACTACTAA 1731 0.4131 MYRFASKLASSIASSTPKNKNLVYNGVLLRRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSHRSPRVTKDGVTVAKSIKFKDKAKNVGAELIKQVAKATNTAAGDGTTCATVLTQAILVEGCKSIAAGVNVMDLRSGINKAVDAVIKDLKSRAVMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLSRGYISPYFITDQKTQKCELENPFILIHDKKISDMNSVLKVLELSVVNKRPLLVVAEDVDSDALAMLILNKHRAGLKVCAIKAPGFGDNRRASLDDLAILTGGEVITEERGITLDKVRPEMLGTAKKITVSIDDTIVLHGGGDKKFIEERCTQLREAMEKSSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYASKVLENLETKNEDERRGVQIIQNALKAPTYTIASNAGYDGTLVHSKLLEQDNLNLGFDAAKGTYVDMVKAGIIDPVKVVRTALVDAASVSLLLTTTEASIVESLNDKNKPPQRVPDMDDLDY 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00619 576 SUPERFAMILY GroEL apical domain-like 216 408 IPR027409 -
Trre15g00619 576 FunFam 60 kDa chaperonin 224 405 - -
Trre15g00619 576 Hamap Chaperonin GroEL [groEL]. 34 574 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 Coils Coil 458 478 - -
Trre15g00619 576 NCBIfam chaperonin GroEL 35 557 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 CDD GroEL 36 556 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 SUPERFAMILY GroEL-intermediate domain like 170 236 IPR027410 -
Trre15g00619 576 SUPERFAMILY GroEL equatorial domain-like 39 553 IPR027413 -
Trre15g00619 576 Gene3D - 169 442 IPR027410 -
Trre15g00619 576 PRINTS 60kDa chaperonin signature 59 85 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 PRINTS 60kDa chaperonin signature 382 407 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 PRINTS 60kDa chaperonin signature 430 451 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 PRINTS 60kDa chaperonin signature 115 142 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 PRINTS 60kDa chaperonin signature 300 323 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 Gene3D GroEL 224 405 IPR027409 -
Trre15g00619 576 Gene3D - 38 555 IPR027413 -
Trre15g00619 576 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 33 565 IPR001844 GO:0042026|GO:0140662
Trre15g00619 576 Pfam TCP-1/cpn60 chaperonin family 55 552 IPR002423 GO:0005524
Trre15g00619 576 ProSitePatterns Chaperonins cpn60 signature. 437 448 IPR018370 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00619 Trre-Chr15 4484074 4489746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00619 K04077 - gmx:100778935 967.992