Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00596 ATGGCGGATAGTGAAACTTGTTGTTCAACTCAGCTTATTGATGGAGATGGCGCATTCAATGCTTCTGGGATTGACAAGTTTATGAAGGAAGTGAAATTGAGTGAATGCGGACTTTCATATGCTGTAGTTTCTATTATGGGGCCACAGAGTAGTGGTAAGAGCACACTATTAAATAATTTGTTTAATACCAATTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGGCATAGAGCCTTGTACGATTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTCGAAAAACAGAGTGCTCTGTTTGCTCTTGCTGTTTCAGATATAGTGCTGATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCGAATAAGCCTCTTTTGAAAACTGTCTTCCAGGTTATGATGAGACTGTTTAGTCCACGCAAAACAACACTGTTATTTGTCATACGTGATAAAACAAGGACACCACTTGAAAACTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGACACCCCTCTAAGTGAATTTTTCAACGTTCAAGTTGTTGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAGGGAGCAGGTTGCCAGCTTGAGGCAGCGTTTTCATCAGTCTATTGCTCCTGGTGGACTTGCAGGGGATCGCCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGTGCACAGGAAATATGGAAAGTGATTAAGGAAAACAAAGATCTTGACCTTCCTGCACATAAGGTTATGGTTGCCACTGTGCGGTGTGAAGAAATTGCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGAATGGAGTCAATTGGAAGAGACTGTGCAATCCGAACCTATTTCTGGATTTGGGAAAAAGATCAATTCACTCCTTCATGCTTGTTTGTCAGAGTATGATGCCGAAGCCACTTATTTCGATGAAGGTGTGAGAACTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTGCAAATTATCCAACCAGCATACCAATCTGCACTTGGACATGTTAGATCTGGAACTTTGGACAAATTCAAGGAGGCATTTGAAAAGGATGTGAAAGGAGGGGAAAAGTTTTCTGAAGCTGCTAATAATTGCGTTGGGTCTTGTGTGGCTCAATTTGATGAAAAATGTGCAGATGTTGTTATTGAACTAGCAAATTGGGATACATCTAAAGTACGAGAGAAACTGTTGCGTGATATTGATGCACATGTTGCATCTGTGCGTGAAGCTAAGATTTCTGAACTTACTTCTTCATATGAGGAAAAACTGAGACAATCTTTGTCTGGACCTGTCGAAGCTCTTTTGGATGGAGCTAATAGTGATACTTGGCCATCAGTAAGGAGCCTTTTTAAGCGTGAGATGCAATCAGCAGTTTTAGGGTATTCTACTGCGCTTAATGGGTTTGATATGGATGAAGAAACAAGACAAAACATGATTTCGAGTTTAGAGGATTTTGCAAGGGGTGTGGTAGAAGGAAAGGCTAGGGAAGAAGCTGGAAGGGTATTGATCCGTATGAAGGACAGGTTTACAATGTTATTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGAGCCATCACTAAAACTGCTCGCTCTGCTTCTTTGAAGTTGCTAGCTGTTATGGCGGCAATTCGTTTGGATGATGGTGATCAAGATAATATTGAGAAAACATTAGCAGTTGCTTTGCTGGATGCGTCAGGCAATGCTGTTAGGAGTATCACAGCGGCTGATCCGCTAGCTACTAGCAGTTGGGAAAAGATTCCACCATCTAAGACACTGCTTACACCTGTCCAGTGCAAATCATTGTGGAGGCAATTCAAGATGGAGACAGAGTACAGTGTTTCTCAAGCCATTTCTGCACAGGAGGCCAACAAGCGTAATAACAACTGGTTACCTCCCCCATGGGCAATACTTGCTTTGGTTATTCTGGGATTCAATGAATTTATGACTCTTCTGAAAAATCCCTTGTATTTGGGTGTCATCTTTGTTATTTTTCTTCTCCTTAAAGCCCTGTGGGTGCAACTTAACATCGCCGGTGAATTTCGCCATGGAATACTTCCAGGACTCATTTCCTTGTCCACCAAGTTTGTTCCAACTATCATGAACCTTATCAAAAGACTAGCAGAGGAGGGTGCCCCTGCAGCTAACGACAATCCTCAGAGAAGCTCATCAAAAAACAACTCAAATGCTGTTCCTGTTGGTAGTTCTGTTTCATCTAGTTCTTCATCTAATGTAACCTCATTGGATAACGGAAACCGATATACCAGTTCATCAAAAGATGAGTAA 2430 0.4185 MADSETCCSTQLIDGDGAFNASGIDKFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNNLFNTNFREMDAFKGRSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKDTPLSEFFNVQVVALSSYEEKEEQFREQVASLRQRFHQSIAPGGLAGDRRGVVPASGFSFSAQEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYASFVANEEWSQLEETVQSEPISGFGKKINSLLHACLSEYDAEATYFDEGVRTAKQKQLQEKLLQIIQPAYQSALGHVRSGTLDKFKEAFEKDVKGGEKFSEAANNCVGSCVAQFDEKCADVVIELANWDTSKVREKLLRDIDAHVASVREAKISELTSSYEEKLRQSLSGPVEALLDGANSDTWPSVRSLFKREMQSAVLGYSTALNGFDMDEETRQNMISSLEDFARGVVEGKAREEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLAVMAAIRLDDGDQDNIEKTLAVALLDASGNAVRSITAADPLATSSWEKIPPSKTLLTPVQCKSLWRQFKMETEYSVSQAISAQEANKRNNNWLPPPWAILALVILGFNEFMTLLKNPLYLGVIFVIFLLLKALWVQLNIAGEFRHGILPGLISLSTKFVPTIMNLIKRLAEEGAPAANDNPQRSSSKNNSNAVPVGSSVSSSSSSNVTSLDNGNRYTSSSKDE 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00596 809 Pfam Sey1 three-helix bundle domain 323 758 IPR046758 -
Trre15g00596 809 MobiDBLite consensus disorder prediction 764 802 - -
Trre15g00596 809 Coils Coil 218 238 - -
Trre15g00596 809 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Trre15g00596 809 MobiDBLite consensus disorder prediction 760 809 - -
Trre15g00596 809 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Trre15g00596 809 CDD GBP 36 239 - -
Trre15g00596 809 Hamap Protein SEY1 [SEY1]. 9 760 IPR008803 -
Trre15g00596 809 Gene3D - 19 249 IPR027417 -
Trre15g00596 809 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Trre15g00596 809 PANTHER PROTEIN SEY1 5 782 IPR008803 -
Trre15g00596 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 249 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00596 Trre-Chr15 4284272 4292611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00596 K22698 - gmx:100777656 1343.18