Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00586 ATGGAAAATTCTCTGTCTGTGACCTCGAGTTTAACGATCGGAGAAACACTGTGTGCGGTGTTCTTTCCTCTAATCGGAATAGCTGAAGCTTTGTTTTATACCTTAATCGGTTGTTTCGATTGCCGCAATCAAGATCAGAAGAAAAAGAAAGAGAAGAAGTTTTCTACCTTTGAAGATATTCTCGCACTCGCTAACGATTCTCCTTTTAATGTGAATGAAATAGAGGCATTGCATGAATTGTACAAGAAATTGAGCTGTTCAATCATTGATGATGGTCTCATCCATAAAGAAGAGCTTACATTGGCACTATTGAAGACCACAGTTGGCAAGAATCTTTTCCTCGATAGGGTCTTTGATCTCTTTGATGAAAAAAAGAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTGATACTTCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGGCAAACTGGATATATTGAACGAGAAGAAGTTCGACAAATGGTGGTTGCTATTTTGTCAGAATGTGGCCTGAACGTGGGAAATGAAATCCTTGAAACCATTATTGATAAGACATTTCAAGATGTTGATGCTGACAAGGATGATAAGATCAGTAAAGAAGAGTGGAAGGAATTTGTCATTCGGAACCCATCACTCTTGAAGCACCTGACTCTTCCTTATCTGAAGGATGTAACCACAGTATTTACCAGTTTCATTTTCAACACCGGAGTTGAAGATTCCCACTGGTAA 768 0.3802 MENSLSVTSSLTIGETLCAVFFPLIGIAEALFYTLIGCFDCRNQDQKKKKEKKFSTFEDILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTTVGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPDTSLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGLNVGNEILETIIDKTFQDVDADKDDKISKEEWKEFVIRNPSLLKHLTLPYLKDVTTVFTSFIFNTGVEDSHW 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00586 255 PANTHER CALCINEURIN B 37 253 IPR045198 GO:0005509|GO:0019722|GO:0019900
Trre15g00586 255 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Trre15g00586 255 FunFam calcineurin B-like protein 3 59 252 - -
Trre15g00586 255 CDD EFh 114 175 IPR002048 GO:0005509
Trre15g00586 255 SMART efh_1 194 222 IPR002048 GO:0005509
Trre15g00586 255 SMART efh_1 113 141 IPR002048 GO:0005509
Trre15g00586 255 SMART efh_1 150 178 IPR002048 GO:0005509
Trre15g00586 255 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Trre15g00586 255 CDD EFh 150 219 IPR002048 GO:0005509
Trre15g00586 255 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Trre15g00586 255 Pfam EF hand 114 139 IPR002048 GO:0005509
Trre15g00586 255 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
Trre15g00586 255 Pfam EF-hand domain pair 149 218 IPR002048 GO:0005509
Trre15g00586 255 SUPERFAMILY EF-hand 64 243 IPR011992 -
Trre15g00586 255 Gene3D - 61 253 - -
Trre15g00586 255 PRINTS Recoverin family signature 164 182 - -
Trre15g00586 255 PRINTS Recoverin family signature 210 230 - -
Trre15g00586 255 PRINTS Recoverin family signature 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00586 Trre-Chr15 4195944 4199087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00586 1 198 EF-hand Containing Proteins AT4G33000 61.616 1.85e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00586 K06268 - gmx:100306023 387.111