Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00583 ATGCAACCATTCGATCCGTATTACATTTACCAGCCAGATGAACGAAGCAACATAAACACACTCTTCGTCTCCGGTTTACCAGACGACGTGAAAGCGCGTGAGATTCACAACCTCTTCCGCCGTCGTCCTGGTTTCGACTCTTGCCAACTCAAGTATACCGGCCGCGCCAACCAGGTTGTTGCATTTGCTACGTTTTTCAATCATCAAGCAGCAATGGCAGCGTTGCACGCCCTAAATGGCGTGAAATTTGATCCTCAATCTGGGTCCGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAACGAAAACCAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAGGGGGAAACCAATGTTCAGGGATCGTCAAGTGATGATGGTGAAAGTGACCCTGATGAACCATCAGAAAATGGCAGCGACCATGGTGATATAGCAACCACACAAAGTGGTGATGCTGTTGTTGGTTCTGACAATCGTGTACCTGTGGCAAGGGAGCAACATGGAAGAGGTGGTGGTGATGGAGGACCATGTTCCACTCTTTTCATTGCAAATCTTGGTCCAAACTGCACTGCGGATGAATTAAAGCAAGCTTTTTCTGCGTATGCTGGATTCAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGTTAAAGTCATGGAGGAGCTTCAGGGAAGCTCACTTCCATCATCAGATCGGGGTGGCATGCATATAGAATATGCAAGGTCTAGAATGAGGAAGAAGCGCTAG 801 0.4669 MQPFDPYYIYQPDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQAAMAALHALNGVKFDPQSGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQGSSSDDGESDPDEPSENGSDHGDIATTQSGDAVVGSDNRVPVAREQHGRGGGDGGPCSTLFIANLGPNCTADELKQAFSAYAGFNMVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSSLPSSDRGGMHIEYARSRMRKKR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00583 266 Gene3D - 14 101 IPR012677 -
Trre15g00583 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Trre15g00583 266 SUPERFAMILY RNA-binding domain, RBD 19 244 IPR035979 GO:0003676
Trre15g00583 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 98 IPR000504 GO:0003723
Trre15g00583 266 FunFam RNA-binding protein with multiple splicing 176 265 - -
Trre15g00583 266 FunFam RNA-binding protein with multiple splicing 2 16 106 - -
Trre15g00583 266 MobiDBLite consensus disorder prediction 99 161 - -
Trre15g00583 266 MobiDBLite consensus disorder prediction 145 159 - -
Trre15g00583 266 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 138 260 - -
Trre15g00583 266 Gene3D - 179 266 IPR012677 -
Trre15g00583 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 247 IPR000504 GO:0003723
Trre15g00583 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Trre15g00583 266 SMART rrm1_1 184 256 IPR000504 GO:0003723
Trre15g00583 266 SMART rrm1_1 20 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00583 Trre-Chr15 4181659 4186885 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00583 - - mtr:25500436 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00583 15 4181659 4186885 Trre15g00583 15 4181659 4186885 ECH