Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00561 ATGGGTTCTTCAAATTCAGCTGACACTATCATCGATAAAGGAAAATTTGCAAATGTTGATATTGCACAGGATTTGTTGAATAAGTTTGATGATGCTGTCAAGTCTCCAAATAAATCGGATGCTATTGAAGCAATAGATTTAACTTCGGAATCAGACAATGTTACCCCTTTCAAAAGGTTCAAAATAAAATGTCGTGTATGTGATGATTCTGGCAGTGCAATGTTTGTCGTAGGTGATCCAGTTGTTTCGTCACTGCTCAATAAACCATTTCGTAGTGTTATTGAGACAATCTTCAACGGAAAGAATCCATTTTTTCATCTATCTAAGGAGACAAGACAATTGGTTGGTCAAGAGTTTTTATTTAAGCTTGATGTGAGTTCTGGAGTTAGCTATCTATCTGGGAGTAGTTACCATTTTAACAAACTTACAAATGATGTAGACGTGATTACAAAATTTAAAGAAATTCATACAACTCAGGATATAATAAGGAATTTCTTGGAAACAACTCATAAAACCCCACAAGGCCCAATAGTGAAAGATCATGATAATGTTAATGTGGTCAAGATTAGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGGAGTGGTAAAAGTACACTTATTAGTGCTTTATTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTCATTGATGGTCTGAACATATGTTCAATGGGGTTGAAGGATTTGAGAATGAGGCTAAGCATAATCCCTCAAGAACCAACTATTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATTTGGAAGTCAAATATTGTAATTGTTTTTGACTTTGACAAAACCATCATTGATTGTGACAGTGATGATTGGGTCATTGATCAATTGGGTTTCATTGATTTCTTCAATCAACTCCTTCCCACCACGCCTTTGAACTCCCTCATGGAGAGAATGATGATGGAGTTTCATTCACATGGCAAAACCATTGAAGACATTGAAACGGTTCTTCATAGGATTCCTATTCACCAAAGAATAATATATGCAATTAAATCAGCACATGCTTTAGGATGTGATTTGAGGATTGTGAGTGATGCCAATACATTTTTCATTGAAACCTTTTTGAAGCATTTGGGAATAAGAGAATGCTTCTCAGAGATTAACACTAATCCTGGTTATGTTAATCAAGAAGGAATATTAAGAATTTTGCCTTATCATGATTTCAATAAGGCTTCACATGGTTGCCCTCTCTGTCCTTCAAATATGTGCAAGGGTTTGATCATAGATAGAATCCGAAGTTCGATTTCTGAGAGGGATAATAATAAGAGGTTTATTTATCTTGGTGATGGTATTGGAGATTATTGTCCTAGTTTGAGGCTTAAAGAGAGAGATTTCATGATGCCAAGGAAGAATTTTCCAGTTTGGGATTTGATATGCAAAGACCCTTCACTTCTTAAGTCTGAAATTCATGCTGCAAGCTGCAAGCTGCAATCTCTATCAATTCCTGTGGCCATAGATTTTTAG 1581 0.3656 MGSSNSADTIIDKGKFANVDIAQDLLNKFDDAVKSPNKSDAIEAIDLTSESDNVTPFKRFKIKCRVCDDSGSAMFVVGDPVVSSLLNKPFRSVIETIFNGKNPFFHLSKETRQLVGQEFLFKLDVSSGVSYLSGSSYHFNKLTNDVDVITKFKEIHTTQDIIRNFLETTHKTPQGPIVKDHDNVNVVKIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGLNICSMGLKDLRMRLSIIPQEPTIFKGSIRTNLDPLGLYSDDEIWKSNIVIVFDFDKTIIDCDSDDWVIDQLGFIDFFNQLLPTTPLNSLMERMMMEFHSHGKTIEDIETVLHRIPIHQRIIYAIKSAHALGCDLRIVSDANTFFIETFLKHLGIRECFSEINTNPGYVNQEGILRILPYHDFNKASHGCPLCPSNMCKGLIIDRIRSSISERDNNKRFIYLGDGIGDYCPSLRLKERDFMMPRKNFPVWDLICKDPSLLKSEIHAASCKLQSLSIPVAIDF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00561 526 Gene3D - 299 481 IPR023214 -
Trre15g00561 526 NCBIfam MtnX-like HAD-IB family phosphatase 292 489 IPR006384 GO:0016791
Trre15g00561 526 Pfam ABC transporter 199 298 IPR003439 GO:0005524
Trre15g00561 526 Gene3D - 183 298 IPR027417 -
Trre15g00561 526 NCBIfam HAD-IB family phosphatase 294 477 - -
Trre15g00561 526 SUPERFAMILY HAD-like 294 477 IPR036412 -
Trre15g00561 526 Gene3D - 47 157 IPR012340 -
Trre15g00561 526 Pfam Putative Phosphatase 293 509 IPR016965 GO:0016791
Trre15g00561 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 290 IPR027417 -
Trre15g00561 526 PANTHER PHOSPHATASE, ORPHAN 1, 2 292 510 IPR016965 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00561 Trre-Chr15 3968672 3981373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00561 192 277 Calmodulin-binding Proteins AT2G36910 33.721 2.90e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00561 K13248 - gmx:100785878 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00561 15 3968672 3981373 Trre11g04653 11 58177628 58179930 PCT