Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00545 ATGATTACAGTGAGTGTTAAGTGGCAAAAGGAACTTTTCAAAGATGTAGAAATTGATACTAGCCAGCCCCCTTATGTTTTTAAGTGCCAATTGTTTGATCTGACCGGTGTGCCTCCTGAAAGACAAAAGATTATGGTCAAGGGTGGTCTTTTAAAGGATGATGCTGATTGGGAAAAGTTAGGAGTGAAAGCAGGTCAAAAGCTAATGATGATGGGAACAGCTGATGAAATTTTGAAGTCTCCGGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAGGAACAAGTAGCTGCTGTTGGACATACTGCTGGTCTTTTCAATTTGGGAAACACCTGCTATATGAACTCAACATTACAATGCCTCCATTCTGTGCCAGAATTGAAGTCGGCTTTGATAGATTACTCACATTCAGGACGGAACAATGATGTTGATCAGTCTTCTCATTTGCTGACCGTTGCAACCCGTGACTTATTCAGTGAGCTTGATAAAAGTGTTAAGCCTGTGGCACCTATGCAATTTTGGATGGTATTGCGTAAAAAGTATCCTCAATTTGGCCAGCTACATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAAATTCTATACACACTTTCACAATCTCTAAGATCCTCCGGATCTAGTGAAAATACTGATGCTGTGAAGGCTCTTTTTGGCATAGAACTTAATAGCAGGATTTATTGCCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAATCTGTCTATTCACTTAAATGCCACATATCGCAGGAAGTAAACCATTTGCATGAAGGACTAAAACATGGTTTAAAATCAGAGTTGGAAAAGGCTTCTGCTGTTTTGGGTCGTAGTGCTATCTACGTTAAAGAGTCGCGCATCAATGCCCTGCCAAGGTACTTGACTGTTCAATTTGTCCGTTTCTTTTGGAAGAGGGAATCAAACCAAAAGGCTAAGATTTTGCGAAAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATCTTTGTTCTGATGAGCTTAAAAAGAAATTGGAAGCTCCTAGACAGTTCCTAAGAAATGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCCCAAGGAAAATGATGTAAAAATGACTGATGCCGAGGGTTCAAATGGAGGAGAGCCATCTGTTGCTCCAATGGAGGAAGGTGAAAAAGAAACACAAATGACTGGAGTGTATGATTTGGTTGCTGTATTGACCCACAAGGGCAGGAGTGCTGATTCAGGACATTATGTTGGTTGGGTGAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCGAAACCTAGACTACAAGACGACATCACTAGACTATCTGGTGGAGGTGATTGGCATATGGCATATATAATCATGTACAAGGCTCGTGTTGTATCTCTGTAA 1437 0.4057 MITVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLKDDADWEKLGVKAGQKLMMMGTADEILKSPEKGTVFVEDLPEEEQVAAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIDYSHSGRNNDVDQSSHLLTVATRDLFSELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQILYTLSQSLRSSGSSENTDAVKALFGIELNSRIYCQESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASAVLGRSAIYVKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSDELKKKLEAPRQFLRNEEGKKLGLKVNEKSSVPKENDVKMTDAEGSNGGEPSVAPMEEGEKETQMTGVYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPRLQDDITRLSGGGDWHMAYIIMYKARVVSL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00545 478 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 475 IPR044635 GO:0004843|GO:0016579|GO:0043161
Trre15g00545 478 FunFam Ubiquitin carboxyl-terminal hydrolase 14 1 73 - -
Trre15g00545 478 MobiDBLite consensus disorder prediction 367 381 - -
Trre15g00545 478 CDD Ubl_USP14_like 1 75 - -
Trre15g00545 478 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 409 427 IPR018200 GO:0004843|GO:0006511
Trre15g00545 478 SUPERFAMILY Cysteine proteinases 102 472 IPR038765 -
Trre15g00545 478 Gene3D - 1 73 - -
Trre15g00545 478 FunFam Ubiquitin carboxyl-terminal hydrolase 14 97 478 - -
Trre15g00545 478 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Trre15g00545 478 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Trre15g00545 478 MobiDBLite consensus disorder prediction 367 402 - -
Trre15g00545 478 Pfam Ubiquitin carboxyl-terminal hydrolase 105 471 IPR001394 GO:0004843|GO:0016579
Trre15g00545 478 CDD Peptidase_C19A 105 472 - -
Trre15g00545 478 SMART ubq_7 2 73 IPR000626 GO:0005515
Trre15g00545 478 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Trre15g00545 478 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 474 IPR028889 -
Trre15g00545 478 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Trre15g00545 478 Gene3D Cysteine proteinases 97 477 - -
Trre15g00545 478 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00545 Trre-Chr15 3837377 3846591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00545 104 335 Miscellaneous Gene Families AT2G24640 23.887 3.23e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00545 K11843 - gmx:100802120 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00545 15 3837377 3846591 Trre15g00545 15 3837377 3846591 ECH