Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00542 ATGTACGGCGGACCTTCCTCCAAATTGGGCCGCGGCGGCGGTCAAAAACGTCCCCGCAATTCGTTCCCCCCTCCTCCACCTCACCGTCCACCTTCCTCCGCCAATTCTCGTCTCTCCCTCGGTGGCTCCAACAAGAAACCACCACCGACGGTGGAGGAAACTTTCAGCCTTGTATCTGGAAGCAATCCCCTCGCTTTCTCTATGATCATAAGACTTGCTCCAGACCTTATTGAAGAGATCAAGCGCGTTGAAGCACAAGGTGGCACTGCGCGTATGAAATTTGATCCCAACCCAAATAATCCCAATGGAAATATTATTGACTTAGGTGGGAAGGAGTTCAGATTTACGTGGTCGAGGGACGGTGATCTATGTGATATTTATGAACAGCGCCAAAGTGGTGTAGATGGAAATGGTTTGCTTGTTGAATCTGGGTGTGCCTGGCGCAAAGTGAATGTACAACGTATCTTGGACGAGTCAACGAAGAATCACGTTAAAATGCGGTCAGAGGAAGCCGAACGCAAGCTGAAGTCACGCAAAGCCATCGTCTTGGAGCCTGGGAATCCATCCATGAAGAGCCAGATAAAGGCATTGGCAGCTGTTGAGGCTACATCATGGAAGAATTACACTAAAAAGAAAGAAGCTGCACTTAAGAAAAAAAAAACGGAAACTCTTCAAGTTGGTGGCCCTCCAAAAACCACTCATAGATCTGGACCGACGTCAACAAGTACTACTGCCAAGGGCAAACATTCTTCTCCTCTTGCATCTTCACCTGATCATTTTGCTCCTTCTTCCTCTCCACGGGGAGCTTTAAATATCTCTAAAAGCCTTGATGATGCTGTGCCATCACAAATGGCTGACAAGCAAGATACCAATGTTGTCTCTGAGAAAGAAATTCCTACCAGGACAAGCAATGCTAAGAGGAACAAACCAGGAGGCAAAGGAAATAATGGATCTAAACCAATAGATTTGCAGAGCATGTTAACTTCTCTCCTAAAGGATAAACCTAACGGAATGACTTTTAAGGCCTTGGAGAAAGCAGTCAGCGACACACTTCCAAATTCCATAAAGGATCTTGAGACCATTATAAAAAGAATTGCAAAATACCATCCTCCTGGAAAGTACATTTTAAAGACAGCAATGGATTCGGAAAGCTTCAAGAAACCTCAGACTGAAAGCGGAAGTTCGCCTGAAGAAAATCATAACCAAACACCTTCCCGTGAAGAGTTTAATAATCAGACATCAGCTCCACATGGAGGTTTCGAAGAGAAAGTTCCAAATGACGATATGGTGGAAAAAATTCAAGTAAAACCCCTAGTAGAAGAAGAATCAAACACAATGGAAAAAATTGACATGCAACATGCTTCACCTGATTTATTTGGTGACAAAAAAGTTTCTGATTTTAGTGAAGGGAGGGCAGGCAGCTCTAGTGCTAGTGGAAGTGATAGTGATAGTGAAAGTAACAGTAGTGACAGTGGAAGCGACAGTGGAAGCCATAGTAGGAGCAGAAGTAGAAGTCCAGCTGGATCAGGGAGTGGGAGTAGTAGTGACAGTGAAAGTGATGCGTCATCCAGCAGCAAGGAGGGATTGGAGGGTTCTGACGAGGACGTAGATATTATGAGTGATGATGACAAAGAGCCAAAGCACAAAGCAGAAGCCAGTGATCAAATGATGTCCTTACCCATTCCAGTAAAATCTCCTGATGGAAGATCTATGCAGAATGAGGTTGATGAGAAGCAGGATGGTAATGAATCTGATGCAGTTGATATTGAAAAGGACTCACCTGAAATGATGCAAACTGCAGATACCATTTCTGATAAAGTTGGAAAAAATGCAGAAGAGACAAAGCCTTTTTCACCTGATTATCAACAGCTCCAGGAGCGCAAAAATTATATAGGGAGTTTGTTTGATGAAAGGGAAAGTGAAGTCAAAGATAGCTCTAGGAACGAACAGTCTGACAGCTCTGATAGGTTATCTAAAGGTAAACATAAGAGGGGTTCCGAATTGAAGAACATTGATGAGAAATCTGAAGGTACAAAGAGGTTGAAAGCAGGAAATTTGACCCGTGAATCATATTCTCCGGGTACAGATGTGCAAATGTTTGGGAACTCTAGAAATTTTTCTCCTTTCGAATTTACTGAAGACACTGGTAAGGGCCCCAATACTCTAGTTGGAAATAGATCTGACAGACAAGGAAACTCCAATCTTGGTTTCCAGAAAGGATACAATCGAGCATTGCCTGGAAAATCTAGTTCAGATTTACCACAAACAGGTCAAAGGTCCTTTGACCAAAGCCCTCTAGGGAACCCTTCCTATCCATTGGAAAAATCAGATAAACCTGGTGAAAACATAAGGCACAATAGGAAAAACTCAGGAAAGGACTTCCGTGCACGTGAAGTTTCTCATGTGCTGGAAAATAAATCTCAGAGAGATGCTCAAAATGGAGATATTTATGCCACCGAGAAAAAAGTCCCCAGGAATTCCAGGGATGGTAATAATGGAAGTAAGCAGTCACTGTTATCCATGGATTCTAATTACCAAAGACAAGGTGAAATGGTTGGTAAGTTAAAGGAAGGCCGACAAGGTGCGCTGTCACATTTGGGAGAATCGCCTATAGATAACAACAGAACTGGTCTTAATAAATCACCTGCTGTTAATGGGCGAGGTATCTCACTTCAAAGAGAGCTTTCAGACTTGGAGTTGGGAGAGCTTCGCGAGTCCACTCCTGATGAAACCATTATTGGAAAGCAATTTGAACGAAAAGGTTCGTTTAAGCATATGGAAAACAAAGCAAACACTTCAGAGGACGTGAATTTAAATATCGGTAAACTAAAACCTTCATTGAAAGCAACTTTAGATTCTGCAAGGCCAACCTCGGTGTTAAGTTCAGGTTTTCCAAGCAATTTGGAAAACACAAATAAAAAGAATGTAGATTATCATTTTGAAGATTCAACAAAGTCTCGTTCTAGAGTTATGCAAACTCAATCGCAACATTTGAAATCAGATAACGCGGACGTTGGATCTCAAAACAAATTGACAGAAATGAGTACCAAGTTTAGAAATAGTGAATCTGGGGTGAGCCATGATACTGATTTGGACGGTCGCAGGGGAAGCAATAGAAGAGTGCCTGCAAATGGTTCTAAGCAAGACACAAAACGCGGAATGGTTTCCTACCCTGTGAAAGAAAGTAAAAGACAAACACCTAATTCAGGTGAAGAGGTGCCTGAAGGTAGAAAGGATTCAGTATTTGTAGATAGAAGTAATGGTGACCAAAAGAAGAGAGAATCCTCCTCAGATGAAAATAGTTGTTCTTATTCGAAGTTTGAAAAGGAGGAACCTGAATTAAAGGGACCTATAAAGACTTTCTCCCAATATAAAGAATATGTGCAGGAGTACGCGGATAAATATCAGAGTTACCTCTCCTTGAACAAGATTTTGATGGATTACAAGGATGAGTTTGACAAACTAGGTGTTGATTTAGAAAATGCTCAAAGAAATGGGGATCAGGATAGATATGATGACATTGGAGCACAAATTATGGAATCCTATAGGCGATGTGCATCGTATCATGCTGTGGAATTGCAGAGACACATGAGACTGAAGAAAATATTTGTTGTGCTTCATGAAGAACTGCTGAGTACCAAGCAAAGGATCAGAGACTTTGCTGATTGGTATAGAGATAGAGACTGA 3687 0.4199 MYGGPSSKLGRGGGQKRPRNSFPPPPPHRPPSSANSRLSLGGSNKKPPPTVEETFSLVSGSNPLAFSMIIRLAPDLIEEIKRVEAQGGTARMKFDPNPNNPNGNIIDLGGKEFRFTWSRDGDLCDIYEQRQSGVDGNGLLVESGCAWRKVNVQRILDESTKNHVKMRSEEAERKLKSRKAIVLEPGNPSMKSQIKALAAVEATSWKNYTKKKEAALKKKKTETLQVGGPPKTTHRSGPTSTSTTAKGKHSSPLASSPDHFAPSSSPRGALNISKSLDDAVPSQMADKQDTNVVSEKEIPTRTSNAKRNKPGGKGNNGSKPIDLQSMLTSLLKDKPNGMTFKALEKAVSDTLPNSIKDLETIIKRIAKYHPPGKYILKTAMDSESFKKPQTESGSSPEENHNQTPSREEFNNQTSAPHGGFEEKVPNDDMVEKIQVKPLVEEESNTMEKIDMQHASPDLFGDKKVSDFSEGRAGSSSASGSDSDSESNSSDSGSDSGSHSRSRSRSPAGSGSGSSSDSESDASSSSKEGLEGSDEDVDIMSDDDKEPKHKAEASDQMMSLPIPVKSPDGRSMQNEVDEKQDGNESDAVDIEKDSPEMMQTADTISDKVGKNAEETKPFSPDYQQLQERKNYIGSLFDERESEVKDSSRNEQSDSSDRLSKGKHKRGSELKNIDEKSEGTKRLKAGNLTRESYSPGTDVQMFGNSRNFSPFEFTEDTGKGPNTLVGNRSDRQGNSNLGFQKGYNRALPGKSSSDLPQTGQRSFDQSPLGNPSYPLEKSDKPGENIRHNRKNSGKDFRAREVSHVLENKSQRDAQNGDIYATEKKVPRNSRDGNNGSKQSLLSMDSNYQRQGEMVGKLKEGRQGALSHLGESPIDNNRTGLNKSPAVNGRGISLQRELSDLELGELRESTPDETIIGKQFERKGSFKHMENKANTSEDVNLNIGKLKPSLKATLDSARPTSVLSSGFPSNLENTNKKNVDYHFEDSTKSRSRVMQTQSQHLKSDNADVGSQNKLTEMSTKFRNSESGVSHDTDLDGRRGSNRRVPANGSKQDTKRGMVSYPVKESKRQTPNSGEEVPEGRKDSVFVDRSNGDQKKRESSSDENSCSYSKFEKEEPELKGPIKTFSQYKEYVQEYADKYQSYLSLNKILMDYKDEFDKLGVDLENAQRNGDQDRYDDIGAQIMESYRRCASYHAVELQRHMRLKKIFVVLHEELLSTKQRIRDFADWYRDRD 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00542 1228 MobiDBLite consensus disorder prediction 950 1109 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 570 595 - -
Trre15g00542 1228 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 7 1224 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 829 847 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 1065 1109 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 688 710 - -
Trre15g00542 1228 Coils Coil 1145 1165 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 226 271 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 631 683 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 1023 1037 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 284 311 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 421 468 - -
Trre15g00542 1228 Pfam Occludin homology domain 1116 1221 IPR010844 -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 951 973 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 469 526 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 987 1022 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 1 51 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 777 805 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 867 885 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 216 321 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 718 770 - -
Trre15g00542 1228 Gene3D - 1120 1223 - -
Trre15g00542 1228 ProSiteProfiles Occludin/ELL (OCEL) domain profile. 1109 1225 IPR010844 -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 383 885 - -
Trre15g00542 1228 MobiDBLite consensus disorder prediction 383 417 - -
Trre15g00542 1228 SUPERFAMILY occludin/ELL-like 1117 1222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00542 Trre-Chr15 3808511 3816797 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00542 - - psat:127076426 1801.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00542 15 3808511 3816797 Trre15g00542 15 3808511 3816797 ECH