Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00534 ATGACTGGTATTCTCAAATTTCAATCTTCAACTCTCTCTAATTTCAATTTATTCTCTGCTTTTTCTTCTCATTCATTCCCATTAAAACGACACCGTTTTGTTAACCCCTTTTTGATTTCTTCATTACAATCAGACTACGCGCAAGAACAAGAAATGGAGATTGAAGCATTAGAAGCTATACTCATGGATGAATTCAAAGAAATACATTCTGGTGAAAGTGGTTTAAGCACTTCTAATAGGTGCTTCCAGATTAAAATCACTGCACAGGAGGAAGAGGAAGATGGGTCAATTACTAATCCAGCTCAACTGGCTTTGATCTTCGCGCACACAGAAAAATATCCTGACGAACCTCCACTTTTGAATGTGAGCAGTTTGCGAGGAATCGGGTCTGAAGATTTAAGGATTTTGAAAGATAAACTTCAACAAGAGGCATCTGAAAATCTTGGCATGGCTATGATCTACACACTTGTTAACTCAGCTAAAGAGTGGTTGATTGAGCGGTTTACTGAAGACTCAGATGGTGATGCTGAAGCAGAAGAGGCAGCCAAAGAAGATATAGTGATACCTCATGGAGAACCGGTTACTGTCGAAACTTTTTTGGCATGGAGGGAAAGGTTTGAAGCTGAACTTGCACTTGAGCGAGCCAAGCTAATGCCAGAGTCTGTGCTTGCTACTCCGAAGGAAAAGAAACTCAGTGGTAGACAGTGGTTTGAAAGTGGAAGGATGAAAGGTGCAGCTATTGTCACCGAGGAATTGGATGAGGACGACGAGGAAGATATTGACTTTGATGATGATGAGGATTTCGAAGATGATGAAGATGATATGCTTGAGCATTATCTCGCGGAAAAATCTGATTCATCCACACATTCTTCCATGCGAGCGAGTTAA 888 0.4077 MTGILKFQSSTLSNFNLFSAFSSHSFPLKRHRFVNPFLISSLQSDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEEEDGSITNPAQLALIFAHTEKYPDEPPLLNVSSLRGIGSEDLRILKDKLQQEASENLGMAMIYTLVNSAKEWLIERFTEDSDGDAEAEEAAKEDIVIPHGEPVTVETFLAWRERFEAELALERAKLMPESVLATPKEKKLSGRQWFESGRMKGAAIVTEELDEDDEEDIDFDDDEDFEDDEDDMLEHYLAEKSDSSTHSSMRAS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00534 295 ProSiteProfiles RWD domain profile. 52 167 IPR006575 GO:0005515
Trre15g00534 295 SMART RWD2001b 52 167 IPR006575 GO:0005515
Trre15g00534 295 Coils Coil 47 67 - -
Trre15g00534 295 Gene3D Ubiquitin Conjugating Enzyme 40 172 IPR016135 -
Trre15g00534 295 PANTHER RWD DOMAIN-CONTAINING PROTEIN 46 277 IPR040213 -
Trre15g00534 295 MobiDBLite consensus disorder prediction 247 273 - -
Trre15g00534 295 MobiDBLite consensus disorder prediction 250 273 - -
Trre15g00534 295 SUPERFAMILY UBC-like 42 166 IPR016135 -
Trre15g00534 295 Pfam RWD domain 48 164 IPR006575 GO:0005515
Trre15g00534 295 FunFam RWD domain-containing protein 1 43 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00534 Trre-Chr15 3787801 3792924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00534 - - gmx:100813322 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00534 15 3787801 3792924 Trre15g00534 15 3787801 3792924 ECH