Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00517 ATGTCTTGTTCCTTCAAATGTTTCCATTTTTTCATCATATTATTCATATTACATGTTTTTACTGCAACATCAATTTCATCATCAACAACAGATGATTCATCATTCAACAATTTTCTAGACAGTGCCAAGAGTCCTGAGGTTTTTGATTGGATGATCAATATCAGAAGGAAAATTCATGAAAATCCTGAATTGGGTTATCAAGAATTTGAAACAAGTAAACTGATAAGATCAGAATTGGATAAAATGGGCATACCTTATAAACATCCAGTTGCAATAACTGGTGTCATTGGTTTCATTGGAACTGGATTGTCTCCTTTTGTTGCTTTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCATAAGAGTAAAGTACCTGGAAAGATGCATGCGTGTGGTCATGATGCTCATGTTACTATGTTACTTGGTGCTGCAAAGATTCTTAAACAGCATGAAAAAGAGATACAGGGGACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAACATTTTAGACGCTGGAGCATTAGAAAATGTTACCGCTATATTTGGATTACATATTGCTCCTGAATTACCAATAGGTGAAGTGGCCTCTAAGTCTGGTCCATTATTGGCTGGAAGTGGCTTCTTTGAAGCAATAATAAGTGGAAAAGGAGGTCATGCAGCTATTCCTCAACAGTCTATAGACCCTATATTGGCAGCTTCAAATGTCATTCTTAGCTTACAACACCTTGTTTCTCGCGAGGCTGATCCTTTAGACTCACAGGTTGTGACGATTGCAAAGTGCCAAGGAGGTAGTGCGTACAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCCTTTTCTAAACAAAGTTTCAACCAACTGAAACAGCGGATTGAGCAGGTTATCATTGGGCAAGCTGCTGTGCAAAGGTGCAATGCAACTGTGGACTTCCTTGATGGAGCAAAACCTTTCTATCCTCCCACTGTAAACAACGGCAACTTGCACGAACATTTTGTGAATGTGGCAGTGAATATGCTTGGTATCAATAAAGTCGAAAGTGCCATGACTCCGTTCATGGGAGCTGAAGATTTTTCATTCTATCAAGAGGTTATACCTGGTTACTTTTTCTTCCTTGGAGTGAAGAATGCCGAACATGAACGGTTTGTGCCATCATTACACTCACCTTATCTCAAAATCAATGAAGATGGACTCCCTTACGGAGCTGCACTTCATGCATCATTAGCTGCTAGTTATCTTCTAAAAAATCAGCAGGATATTGTACCTGGTGTTGAGAGAAAATATCATGATGAATTATAA 1344 0.3981 MSCSFKCFHFFIILFILHVFTATSISSSTTDDSSFNNFLDSAKSPEVFDWMINIRRKIHENPELGYQEFETSKLIRSELDKMGIPYKHPVAITGVIGFIGTGLSPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGGGAKNILDAGALENVTAIFGLHIAPELPIGEVASKSGPLLAGSGFFEAIISGKGGHAAIPQQSIDPILAASNVILSLQHLVSREADPLDSQVVTIAKCQGGSAYNVIPDSVTIGGTFRAFSKQSFNQLKQRIEQVIIGQAAVQRCNATVDFLDGAKPFYPPTVNNGNLHEHFVNVAVNMLGINKVESAMTPFMGAEDFSFYQEVIPGYFFFLGVKNAEHERFVPSLHSPYLKINEDGLPYGAALHASLAASYLLKNQQDIVPGVERKYHDEL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00517 447 PIRSF Amidohydrol_AmhX 38 432 IPR017439 GO:0016787
Trre15g00517 447 CDD M20_IAA_Hyd 51 416 IPR044757 GO:0009850|GO:0016787
Trre15g00517 447 Gene3D - 216 334 - -
Trre15g00517 447 NCBIfam amidohydrolase 51 415 IPR017439 GO:0016787
Trre15g00517 447 FunFam N-acetyldiaminopimelate deacetylase 216 334 - -
Trre15g00517 447 SUPERFAMILY Zn-dependent exopeptidases 46 430 - -
Trre15g00517 447 PANTHER PEPTIDASE M20 FAMILY MEMBER 22 434 IPR017439 GO:0016787
Trre15g00517 447 Pfam Peptidase dimerisation domain 217 311 IPR011650 -
Trre15g00517 447 Pfam Peptidase family M20/M25/M40 108 424 IPR002933 GO:0016787
Trre15g00517 447 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 335 IPR036264 -
Trre15g00517 447 Gene3D Zn peptidases 51 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00517 Trre-Chr15 3708045 3710492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00517 K21604 - gmx:100789077 689.493