Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00460 ATGGGGAGTTCTGAAGGGTTTGGAGCATCGTCAAAGCCTGCGAATTCTTCTTCGCAGGTGCTTCCGTCCAAACAATATGGTGTTACAAAGCCTATTTCAATGGCTGGACCTACCGTTGCTGATTTGAAGAGGACTCAAAAGTTGGAGAAGTTTCTCGCTGATTCAGGGCTATATGAGAGCAAGGAGGAGGCTTCCAAGAGAGAAGAGGTCCTTCATCGACTTCGAGAGATAGTAAAAAGTTGGGTAAAGCAGCTTACTCGTCTGAAAGGGTACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATAGTCACTTTTGGTTCTTATCGTCTTGGCGTTCATGGTCCTGGCGCTGACCTAGATACACTGTGTATTGGGCCATCCTATGTGAACCGGGAGGAGGATTTTTTCTACACATTGCATGGTATCTTAGCTTGCATAGACGAAGTTACTGAATTGCAACCAATTCCAGAAGCTCATGTCCCAGTTATGAAGTTCAAGTTTGACGGAATATCGATCGACCTTCTTTATGCAAGTATTTCTTGCTTGATTGTACCTGAAGAAATGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACTGTTCGAAGTTTGAATGGTTGTAGGGTTGCTGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGTACTTTCGAACAACACTCCGGTGCTTAAAGTTTTGGGCCAAAAGACGTGGTGTTTATTCCAATGTGACAGGTTTTCTCGGTGGTGTTAACTGGGCACTTCTTGTAGCTCGGGTCTGTCAATTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGCTCGATAGAGGAGAACGAGCTTGGGTTTTCTGTGTGGCATCCTCGAAAAAATCCTCGTGATCGATCCCATCTTATGCCAATCATAACTCCTGCCTATCCATGCATGAATTCAAGTTATAATGTTTCTACAAGCACACTTCGAGTTATGATGGAGCAGTTCCAATATGGAAACAAAATCTGTGGTGATATAGAACTGAATAAAGTCTGCTGGAGTGCTCTGTTTGAACCATACATTTTCTTTGAAGGCTACAAAAACTTCTTGCAAATTGACATAGTTGCTGCTGATGTTGATGACTTGCGTGCTTGGAAAGGTTGGGTGGAATCACGCCTTAGGACACTGACTTTGATGATTGAGCGTGATACTTTCGGGAAGTTGCAGTGCCATCCCGATCCAAAGGAGTATATTGATAATTCAAGGAACTGTGCACATAGTGCTTTCTTCATGGGCTTGCAGAGGAAACAGGGGGAGGTTGTTCAAGAAGGCCAGCAGTTTGATATACGTGGGACTGTTGAAGCATTTCGGCATTGTGTTAACATGTACAGTTTCTGGAAACCTGGAATGGACATGCATGTTTCACACATTCGTAGAAGGCAAATCCCAAGCTACGCCTTTCCTGATGGTTATAAACGATATCGACCATCAAAGTCAACAGCACAACTGGAGAATCCTTCAAAATCAGGTCATGAAAATGAGGTTTCTGGGTCTGAACTTCGTGAGAGGAACTTAAAGAGGAAGCATGATGACAGGGTGAATCTGGATATTTTACCAAAAAGGCGTTCCACCAGTCCTCCCGTGGAGAGCTTGACAGGAGGCATCTCGTGCCTTGGTGCTGGTGACATGTCTGTTGATGCTGTATCTGATTGTCAAGAGTTAAAAACTGTTGGGAGGGCGAGTTCGTCCAGTAGTGAGCAAGATGAATTGGATAGAAGAATGTCTCCAGAAGCTGGGACTGAATGTGCATCAAATTCGAGTGTGGTTACATCCGTTTCAAGTGAAGGTGGCTCTCCTGAAGGTGTTGGATCTCTATCAGTAGCAGGTTATGTTGAGGATGGCGCCATGGATGTTGTTGAGGCGATGACCAACGATAGATTCAAGGATATCACCTACAGGGCCGTTGAAAATAATGAAGTATTGCAAGATGCACTCCGTACACAGTTGGAGCCAATTGCAATGTCCGGGATGTTTCTTGATTCTAACGGAAGCTTTGACTCAGACGCCGTGCAAAACACAGTGATAAGGAGACTGAGTCTAACATCGACAGCGTAA 2151 0.4412 MGSSEGFGASSKPANSSSQVLPSKQYGVTKPISMAGPTVADLKRTQKLEKFLADSGLYESKEEASKREEVLHRLREIVKSWVKQLTRLKGYTDQMVEDANAVIVTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTLHGILACIDEVTELQPIPEAHVPVMKFKFDGISIDLLYASISCLIVPEEMDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEYFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFSVWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICGDIELNKVCWSALFEPYIFFEGYKNFLQIDIVAADVDDLRAWKGWVESRLRTLTLMIERDTFGKLQCHPDPKEYIDNSRNCAHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHCVNMYSFWKPGMDMHVSHIRRRQIPSYAFPDGYKRYRPSKSTAQLENPSKSGHENEVSGSELRERNLKRKHDDRVNLDILPKRRSTSPPVESLTGGISCLGAGDMSVDAVSDCQELKTVGRASSSSSEQDELDRRMSPEAGTECASNSSVVTSVSSEGGSPEGVGSLSVAGYVEDGAMDVVEAMTNDRFKDITYRAVENNEVLQDALRTQLEPIAMSGMFLDSNGSFDSDAVQNTVIRRLSLTSTA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00460 716 CDD NT_PAP_TUTase 66 221 - -
Trre15g00460 716 FunFam Poly(A) polymerase alpha, putative 59 215 - -
Trre15g00460 716 MobiDBLite consensus disorder prediction 510 525 - -
Trre15g00460 716 Gene3D Beta Polymerase, domain 2 59 215 IPR043519 -
Trre15g00460 716 SUPERFAMILY Nucleotidyltransferase 24 220 IPR043519 -
Trre15g00460 716 MobiDBLite consensus disorder prediction 611 632 - -
Trre15g00460 716 Gene3D Poly(A) polymerase predicted RNA binding domain 374 489 - -
Trre15g00460 716 Pfam Poly(A) polymerase predicted RNA binding domain 374 433 IPR007010 GO:0003723|GO:0043631
Trre15g00460 716 PANTHER POLY A POLYMERASE 14 532 - -
Trre15g00460 716 MobiDBLite consensus disorder prediction 1 26 - -
Trre15g00460 716 Pfam Poly(A) polymerase central domain 27 371 IPR007012 GO:0043631|GO:1990817
Trre15g00460 716 Pfam Nucleotidyltransferase domain 100 169 IPR002934 GO:0016779
Trre15g00460 716 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 374 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
Trre15g00460 716 MobiDBLite consensus disorder prediction 588 633 - -
Trre15g00460 716 FunFam Nuclear poly(A) polymerase 4 373 489 - -
Trre15g00460 716 FunFam Putative poly(A) polymerase gamma 179 369 - -
Trre15g00460 716 Gene3D - 27 369 - -
Trre15g00460 716 MobiDBLite consensus disorder prediction 508 563 - -
Trre15g00460 716 MobiDBLite consensus disorder prediction 526 550 - -
Trre15g00460 716 MobiDBLite consensus disorder prediction 1 30 - -
Trre15g00460 716 SUPERFAMILY PAP/OAS1 substrate-binding domain 222 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00460 Trre-Chr15 3297718 3301866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00460 K14376 - gmx:100783237 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00460 15 3297718 3301866 Trre15g00460 15 3297718 3301866 ECH