Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00450 ATGGCCTCTTATAGGCCTTTCCCTCCTCCACCGGCGAGTCAAAACCCTATCGCACCACCACCACCCCCACCCCCGCCGCAACAACGGGGGAATAATAATTGGGGTGGTTATGGTTACGGTGGTGGTGGTGGAGATTCTTCCACTTCATTCCCTCCAAATTCAAATTATCAACATCATCAGCATCATCATGTTCCTCCTCCTCCACCGCCTTCAAATTACTATCCATATCCACCACCGCCGCCTCCACCACCTGAAAATTCATACCAGCCACCACCTCCGCCACCGCCTGGTCCTATGTATTATCCACCTAATAATCAATATAATCATCAACAACCACCGCCTCCGCCACCTCCTTTGTCGCCGGGTTCTTCTATGCCGCCTCCACCACCACCTCCTCCAGCCTCACCGCCGCCTCCTCCAAACAACATTGAAGTGGAGAGGGGAGTCAATAAAGGGTCTTCTGGGAGACGCGATGTAGTTCAGCATAAACAGCAGCACAAGCCTTCTCACGGGCATCCTCCAAGGAGAATTGAGACGGAGGAAGAGAAGCGGTTGAGGAAGAAGAAGGAGTATGAGAAGCAAAGGCAAGAAGAAAAACATAGGCAGCAGCAGAAGAAGCTGAAGGAATCACAGAATAGTGTTTTGCAAAAGACTCAGATGGTGTCATCTGGGGGGACTGGAAAGGTGCATGGTTCTATTGCAGGGTCTCGAATGGGAGAGAGGAGAACTGCGCCTTTATTGGGCGGTGAGAGGGTTGAAAATAGGTTGAAAAAGCCCACCACTTTTTTGTGTAAGCTCAGATTTCGAAATGAACTTCCAGATCCAACTGCACAACCTAAGCTAATGGCGTTCAAGAAAGATAAAGATCAATATGCAAAATATACAATCACATCACTGGAGAAAATGTACAAACCCAAACTTTTCGTGGAGCCAGATCTAGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTACAATCCTCCCAGTGTTCGACCACCTCTTGCTCCAGAAGATGAAGATTTATTGCGAGATGATGAAGCTGTTACTCCTATGAAAAAAGATGGTATTAAAAGAAAAGAGAGGCCTACTGATAAAGGTGTCGCTTGGCTTGTTAAAACACAATATATATCTCCTTTAAGCATGGAATCGGCCAAACAGTCGTTAACTGAAAAACAAGCTAAGGAGCTGAGAGAGAGGAAGGGAGGCCGTAGTCTTTTGGAAAATCTTAACAATAGGGAAAGACAAATCAGGGAAATAGAAGCATCATTTGAAGCAGCTAAGTCCCAACCTGTTCATGCAACAAAGAAAGATTTGTATCCTATTGAGTTTATGCCATTGTTGCCTGATCTTGATAGGTATGATGATCAGTTTGTTGTTGCTGCATTTGATAATGCTCCAACAGTTGATTCAGAAATGTACAGTAAGATGGACAAATCTGTTCGTGATCTCTCTGAATCAAGGGCAGTTATGAAAAGTTATGTTGCAACAAGCTCAGATCCTGCAAATCCTGAGAAATTTTTGGCATACATGGTCCCAGCACCTGGAGAGTTGTCAAAGGATATATATGATGAAGATGAAGAAGTCTCTTATTCTTGGGTTCGCGAGTATCATTGGGATGTTCGAGGTGATGATGCACATGATCCCACAACATTCTTAGTTTCATTTGATGAGTCAGAAGCTCGTTATTTGCCTCTTCCAACTAAACTAGTTTTAAGAAAAAAGAGGGCTAAAGAGGGAAGATCGGGTGATGAGGTTGAACAATTTCCTGCTCCTGCTAGAGTGACTGTGAGGAGAAGATCAAGCGTTGCTGCAATCGAGCGGAAGGATTCTGAGGTTTATACACGTTTAAAGGGCAATTCGTCGAAGAGCTTAGAAATGGATGACGATCTCGACGACCAACATAGAGCTGCAGAGCACCATGATAATTTCCAATCTAGTGGAGAAGATGAAATGTCCGAATGA 1962 0.4485 MASYRPFPPPPASQNPIAPPPPPPPPQQRGNNNWGGYGYGGGGGDSSTSFPPNSNYQHHQHHHVPPPPPPSNYYPYPPPPPPPPENSYQPPPPPPPGPMYYPPNNQYNHQQPPPPPPPLSPGSSMPPPPPPPPASPPPPPNNIEVERGVNKGSSGRRDVVQHKQQHKPSHGHPPRRIETEEEKRLRKKKEYEKQRQEEKHRQQQKKLKESQNSVLQKTQMVSSGGTGKVHGSIAGSRMGERRTAPLLGGERVENRLKKPTTFLCKLRFRNELPDPTAQPKLMAFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEDLLRDDEAVTPMKKDGIKRKERPTDKGVAWLVKTQYISPLSMESAKQSLTEKQAKELRERKGGRSLLENLNNRERQIREIEASFEAAKSQPVHATKKDLYPIEFMPLLPDLDRYDDQFVVAAFDNAPTVDSEMYSKMDKSVRDLSESRAVMKSYVATSSDPANPEKFLAYMVPAPGELSKDIYDEDEEVSYSWVREYHWDVRGDDAHDPTTFLVSFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQFPAPARVTVRRRSSVAAIERKDSEVYTRLKGNSSKSLEMDDDLDDQHRAAEHHDNFQSSGEDEMSE 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00450 653 SUPERFAMILY Formin homology 2 domain (FH2 domain) 128 140 - -
Trre15g00450 653 MobiDBLite consensus disorder prediction 62 143 - -
Trre15g00450 653 MobiDBLite consensus disorder prediction 1 29 - -
Trre15g00450 653 MobiDBLite consensus disorder prediction 208 226 - -
Trre15g00450 653 Coils Coil 177 213 - -
Trre15g00450 653 MobiDBLite consensus disorder prediction 46 60 - -
Trre15g00450 653 Pfam Paf1 262 644 IPR007133 GO:0006368|GO:0016570|GO:0016593
Trre15g00450 653 MobiDBLite consensus disorder prediction 614 647 - -
Trre15g00450 653 MobiDBLite consensus disorder prediction 150 207 - -
Trre15g00450 653 Coils Coil 409 429 - -
Trre15g00450 653 PANTHER RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG 233 653 IPR007133 GO:0006368|GO:0016570|GO:0016593
Trre15g00450 653 MobiDBLite consensus disorder prediction 614 653 - -
Trre15g00450 653 MobiDBLite consensus disorder prediction 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00450 Trre-Chr15 3233034 3238842 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00450 K15174 - gmx:100800148 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00450 15 3233034 3238842 Trre15g00450 15 3233034 3238842 ECH