Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00425 ATGGTGAATGAGCAGAAAACAGCAGCTTTAGAAAGCAGTGGCACAATCACAATGAGTGGCCCTCTCAACGAAGCCTCGGAGAAAACTAGTCGGCGCCGGAGAAACGAGGCGATGCAGCTGATTCTAAGGGCTTTGTGCATGGGAAGCTCAATTGTTTCTTTGTCACTAATGATCACAGCCAAACAAAACAAATCAGTTCCTATCTATGGCTTTCAGTTACCTGTTCAATCCAAATGGTCTTTCTCTCAATCTTATGAATTTCTTGTCGGGGTTTCTGTTGCCGTTGCAGCTCACTCATTGTTGCAACTACTTATTGGCATGTCAAGATTTCTTAGGACATATTCTGTGATTTCTTCTAGAAATCACGCATGGGTAATTTTCGCCGGGGATCAGGCATTTGCTTATGCACTGATGAGTGCAGGATCAGCTGCTTCTGGAGTTACAAATCTGAATCGCACAGGAATTAGACATACACCTCTTCCAAATTTTTGCAAACCTTTGCACAAATTTTGTGACCATGTTGCCATATCAATAGTCTTCAATTTCATCAGTTGTTTTTTGCTTGCTACATCAGCTGTCCATGATGTAATATGGCTCTCCCAACACTGA 609 0.4236 MVNEQKTAALESSGTITMSGPLNEASEKTSRRRRNEAMQLILRALCMGSSIVSLSLMITAKQNKSVPIYGFQLPVQSKWSFSQSYEFLVGVSVAVAAHSLLQLLIGMSRFLRTYSVISSRNHAWVIFAGDQAFAYALMSAGSAASGVTNLNRTGIRHTPLPNFCKPLHKFCDHVAISIVFNFISCFLLATSAVHDVIWLSQH 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00425 202 PANTHER CASP-LIKE PROTEIN 4A4 28 199 - -
Trre15g00425 202 Pfam Casparian strip membrane protein domain 34 187 IPR006702 -
Trre15g00425 202 MobiDBLite consensus disorder prediction 1 31 - -
Trre15g00425 202 NCBIfam plant integral membrane protein TIGR01569 40 191 IPR006459 -
Trre15g00425 202 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00425 Trre-Chr15 2997507 3000986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00425 33 202 Miscellaneous Gene Families AT3G16300 49.412 5.55e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00425 - - pvu:PHAVU_010G146500g 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00425 15 2997507 3000986 Trre15g00425 15 2997507 3000986 ECH