Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00414 ATGAGCACCACTACTCTACCTTCAGTTCCACCACAAGATGCATGGACTCTCACTTCCCACAACTTCCTCTCTCGTTGGGATTCCCTCTCTCACCAGTCAACGATCCCAATTTCGATATCTAGAGTTAACCAAGTTGATGCTGCAAGATTGGACATTGAAATGTCAGCCATGTTGAAAGAACAATTGGTTAAAGTCTTCACTTTGATGAAGCCAGGAATGCTATTTCAATATGAAGCAGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCTATTTGGGTGGATAAACCAACTCCCGGTATTGCTCTCATGAATTTGAGGTATAGAGATGAGCGTGCAGTTGAAGCAAGAGAAAAAGTAAGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATTTGGGCTCGCTTACAATCGTTCTCTGCATTTCGTAGGTGGGGTGATACTGAGCAGAGACCGTTGGCCCGGCGTTTATGGATCTTCATACAGAGAATAGAAGGGATTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACGGGAAGATATCGAAATCTTATTGAAAGAGTCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAACCGTGCTGTTAGCTTTGAGTATATGAACCGACAATTAGTTTGGAATGAATTCTCGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTAAAGAATCTCCTCCGACCTTTTTCTAAGGATAAATCATCAAGTTCGGATGAGGATACCACTGCATGTCCTATTTGTCAGGCTACTCCAATCATTCCTTTTGTTGCTTTACCTTGTCAGCACAGATATTGTTACTACTGTCTTCGGACACGGTGTGCTGCTGCCCCTTCATTTAGGTGTTCGAGGTGCAGTGAGCCAGTTGTTGCCATGCAACGACATGGTGGTGTCTCCACGGAATGA 1002 0.4321 MSTTTLPSVPPQDAWTLTSHNFLSRWDSLSHQSTIPISISRVNQVDAARLDIEMSAMLKEQLVKVFTLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEAREKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWIFIQRIEGIYRAASFGNLLIFLCTGRYRNLIERVLRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSDEDTTACPICQATPIIPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVSTE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00414 333 ProSitePatterns Zinc finger RING-type signature. 293 302 IPR017907 -
Trre15g00414 333 PANTHER PEROXISOME BIOGENESIS FACTOR 2 2 332 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Trre15g00414 333 SUPERFAMILY RING/U-box 272 323 - -
Trre15g00414 333 ProSiteProfiles Zinc finger RING-type profile. 277 318 IPR001841 -
Trre15g00414 333 Pfam Zinc finger, C3HC4 type (RING finger) 277 317 IPR018957 GO:0046872
Trre15g00414 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 329 IPR013083 -
Trre15g00414 333 Pfam Pex2 / Pex12 amino terminal region 53 255 IPR006845 -
Trre15g00414 333 CDD RING-HC_PEX2 274 321 IPR045859 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00414 Trre-Chr15 2892987 2896060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00414 K06664 - gmx:100805856 578.17