Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00262 ATGGCATCGTCCCCCGCCAAACTCGATCAAGATCAGCTTTTGGTCGAACGTAAATTATCTGCTAGAGTTTTGACATTGAACAGGCCAAAGCAATTAAATGCCCTCTCTTATCATATGGTATCTAAGCTACTGGAAATATTTCATGATGACGAAGGAAATACTGATGTTAAATTGGTCATCGTTAAGGGAAATGGAAGGGCATTTTGTGCTGGAGGTGATGTTGCAGCTGTTGCTCGTGATTCGAGAGGAGGTGATTGGCGGTTTGGCGCAATATTTTTTAATACTGAATATAACATGAATTATTTGATGGCAACATATAGTAAGCCTCAGGTTTCAATTCTTAATGGAATTGTCATGGGAGGTGGCGCTGGTGCTTCTATGCATGGAAGATTTCGTATCGTTACAGAGAATACAGTCTTTGCAATGCCAGAAACAGCGTTGGGATTATTTCCCGATGTAGGCGCCTCATATTTCTTGTCTAGACTAGCTGGATTTTTTGGAGAATATGTTGGTCTTACTGGTGCTAGGTTGGATGGTGCAGAAATGCTTGCTTGTGGTCTTGCAACACATTTTGTCCCTTCATCGAAATTATCGTTATTGGAAGAATCATTATGCAAGGTGGAAACTAGTGATCCAGTTGTAGTATCTTCAATTATTGACAAGTACTCCGAGCAGCCGGCCCTTAAAGCGGATAGTGTTTATCACAGGATGGATGTAATCAATAGGTGTTTCTCTAGGAAAACAGTGGAAGAAATATTATCTTCTCTTGAGACCGAAGCTACGAGTAAGGCAAATAGTTGGATTTCTTCAACTCTTGAAACCTTGAAGAAAGCATCTCCAACAAGCCTTAAAGTCTTCCTTAGATTGATTAGAGAAGGCAGGCTCTTAGGTGTTGGTCAATGCCTTGTTCTTGAGTACAGAATTGTTTGCCATATCCTACGAGGACACCACAGCAAGGATTTCTACGAGGGTTGTAGAGCTATACTGATAGATAAAGACAGAAAGCCAAAGTGGGAGCCTTCCAAATTGGAGCTTGTGAGTGATAGCGACGTCGACCGTTACTTCTCTAAGGTTGATGCAGAAGGATGGAAAGATTTGGAGTTTCCCAAAAGGTTCAACAACTTGCCTGCACATGCTATTTCAAAGCTTTAA 1152 0.4132 MASSPAKLDQDQLLVERKLSARVLTLNRPKQLNALSYHMVSKLLEIFHDDEGNTDVKLVIVKGNGRAFCAGGDVAAVARDSRGGDWRFGAIFFNTEYNMNYLMATYSKPQVSILNGIVMGGGAGASMHGRFRIVTENTVFAMPETALGLFPDVGASYFLSRLAGFFGEYVGLTGARLDGAEMLACGLATHFVPSSKLSLLEESLCKVETSDPVVVSSIIDKYSEQPALKADSVYHRMDVINRCFSRKTVEEILSSLETEATSKANSWISSTLETLKKASPTSLKVFLRLIREGRLLGVGQCLVLEYRIVCHILRGHHSKDFYEGCRAILIDKDRKPKWEPSKLELVSDSDVDRYFSKVDAEGWKDLEFPKRFNNLPAHAISKL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00262 383 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 9 380 IPR032259 GO:0003860
Trre15g00262 383 SUPERFAMILY ClpP/crotonase 11 341 IPR029045 -
Trre15g00262 383 Pfam Enoyl-CoA hydratase/isomerase 22 355 IPR045004 -
Trre15g00262 383 Gene3D - 8 373 - -
Trre15g00262 383 CDD crotonase-like 13 197 - -
Trre15g00262 383 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 7 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00262 Trre-Chr15 1792168 1799062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00262 10 383 Miscellaneous Gene Families AT5G65940 68.717 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00262 K05605 - gmx:100170729 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00262 15 1792168 1799062 Trre15g00262 15 1792168 1799062 ECH