Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00260 ATGGAAGAGGTGGGATTAGGTCTTGATGAGAACGATTACTTATCTTGCTGTGGAAGCACCAAATGGGCCAAAGAAATGGCTTCAAATTCTCCTTTCTCCAACTACCACCGTGCCCTTTCTGTTTCCAAACACATTTGGCTCAACAAACTTGATATCAATAGTTGGCTACAAGCTTTCTCTGCTCATCCTGCAATCGGTCAAACTCATGCTCCTTCTCATGCATCTCAAACCAGTGCTCAGTGGAGTAGGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGATTCTAAATTACAGGAACTAGCTGAATGGAATGCTCGGTATATGCAAAAGTTTGGGTTTGTATTTCTCATAGTCGCATCTGGGATAAGTACTGATGCTGTACTTGCTGAAATAAAGAAACGCTATACAAACAGACCAATTGTTGAATTGGAGATTGCATCTCAGGAGCAAATGAAGATTACAGAAATCCGCCTTGCAAAGCTCTTTACAAGTAAAAAAGCCATATCTTCTGATAAGAATTCTACTGTTGCTGCTAGAAATGCAGAAGAAGTTCGTGTAAACGTTATTGGAGGTCATGTGACTGCTGCTCCGGACACTTTATCAGGAACATCCATCCGAAATTCATCTAGAGACCGCCCACCTATTACCACTCACGTGTTGGATGTTTCGCGGGGTTATCCAGCTTCCGGTATTGAGGTGATTTTGGAGATGTGGAAGGGCAACCAAGCTCGTCCGCCATTTGGGACTACAGATAGTCCCGGTTGGGTTTTTAAAGGGTCTTCGACGACAGATTCAGACGGTCGTAGTGGTCAACTGATTGACATAGTTGATGATGCTGAACCAGGGATATACAGGTTAAGTTTCAACACCGGAAAGTACAATCCAAACGGCTTTTTTCCTTATGTATCTGTTGTGTTTGAAATTTTCGAGTCACAAAAGAAGGAACATTTTCATGTTCCTTTGTTGCTTTCACCATTTTCATTTAGCACTTACCGTGGAAGCTAA 1008 0.4246 MEEVGLGLDENDYLSCCGSTKWAKEMASNSPFSNYHRALSVSKHIWLNKLDINSWLQAFSAHPAIGQTHAPSHASQTSAQWSRGEQSTALATATDSKLQELAEWNARYMQKFGFVFLIVASGISTDAVLAEIKKRYTNRPIVELEIASQEQMKITEIRLAKLFTSKKAISSDKNSTVAARNAEEVRVNVIGGHVTAAPDTLSGTSIRNSSRDRPPITTHVLDVSRGYPASGIEVILEMWKGNQARPPFGTTDSPGWVFKGSSTTDSDGRSGQLIDIVDDAEPGIYRLSFNTGKYNPNGFFPYVSVVFEIFESQKKEHFHVPLLLSPFSFSTYRGS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00260 335 PRINTS Transthyretin signature 215 235 IPR000895 -
Trre15g00260 335 PRINTS Transthyretin signature 313 335 IPR000895 -
Trre15g00260 335 Pfam HIUase/Transthyretin family 216 334 IPR023416 -
Trre15g00260 335 Pfam OHCU decarboxylase 15 160 IPR018020 -
Trre15g00260 335 Gene3D Transthyretin/hydroxyisourate hydrolase domain 205 333 IPR036817 -
Trre15g00260 335 CDD TLP_HIUase 214 335 IPR014306 GO:0006144|GO:0033971
Trre15g00260 335 PANTHER 2-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED 7 234 - -
Trre15g00260 335 ProSitePatterns Transthyretin signature 1. 219 234 IPR023418 -
Trre15g00260 335 ProSitePatterns Transthyretin signature 2. 318 330 IPR023419 -
Trre15g00260 335 Gene3D - 9 166 IPR036778 -
Trre15g00260 335 FunFam Uric acid degradation bifunctional protein TTL 205 333 - -
Trre15g00260 335 MobiDBLite consensus disorder prediction 67 86 - -
Trre15g00260 335 SUPERFAMILY UraD-Like 14 164 IPR036778 -
Trre15g00260 335 MobiDBLite consensus disorder prediction 69 86 - -
Trre15g00260 335 NCBIfam hydroxyisourate hydrolase 215 335 IPR014306 GO:0006144|GO:0033971
Trre15g00260 335 SUPERFAMILY Transthyretin (synonym: prealbumin) 208 335 IPR036817 -
Trre15g00260 335 FunFam Uric acid degradation bifunctional protein TTL 10 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00260 Trre-Chr15 1783081 1786295 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00260 K13484 - gmx:100788368 478.404