Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00252 ATGAAGGGTGAAGAAGAGATGATAAAGACAACAACATCAACCTTGGAAGCTCCAAGTGATGTTCCTGCTGCTGAAGGAAGTGAGGGAAATGGAAATGGTGCTGATGATGGTGTTGATGGAGAGAAAGATGGTTCTTTTACTGAAAAGGAGAATACCCAGTTAGAAAAAGAGGGAAATGAGGATAACCAAGCTGAAGATTCTGAAGAAGATGAATCAGATGAAGAACAGCAAGAAAATGGAGTTGATGATCCTGAACTTGAACAAAATATTCCTTCTCTTGATGACGGATTCTATGAAGTTGAAGTTATACGTCGCAAGAGAACCCGCAAGGGAAAGCTGGAGTACTTTGTCAAGTGGTTGGGATGGGACGAATCAGCAAACACGTGGGAGCCTCCAGAAAATTTAGTTGGTGTTCCTGAAATTATCGAAGCTTTCGAGAGCTCTAAATCTGAAAAGCAGCGTAAGCGCAAACGCAAGGAAGTGGTTCATAGCGCCCCTCTAAAGAAGAGGGTGGAGCGTTCGGCCACTCCTTACAGCCTTAGATGCTTAAAAACTAGTGCACCTACTAAGAACAATTCACAGGCAGCTCAAAACAATTCACAATCTGCCCCTCTCGAGGAAAAACCTATTACTCCTGCTATTCCCGACATTCCTGCATTTCCTCAGACCGTGCTGTTTGCTGATGAAGTAGAGAGTGATGGTGATGGAAACAGTCTTAAAAGAACTGATTATGCTGATGGTAGTAGGTCTGAAAATCTTCCAGAAGAGGTTCCTCTAAATAACGAGGAAAAAGAGTATGATCCTAAGCTCAGCGAACTTAAAGCTGCGACAACCAATGGAAATGGTGTAGACAACCTTGCAATACCGTTTCAAGAAGCTATCGTTTCTCCAGAAAATACTCAAATGAATGATCAACCAAACGCGGTCGGTGCAGAACCGATTACTGAAAACAATGTGGTTGGCACAGAACAAGTTCAGAATGGCCCCAGCCGGTCAGCAAACAGACGGAGAAAGTCATTATCTGTGAAGAGGTTCAAGATAGATTCATGTGATAATAAGCTGGGTAATACACAAACACCAAATTCCGCACCGGTTGGTACAGCTGAGCCAACACAAACAGGTGTTACTGATAATGTGGCGGCTCCTAATAGTCATACAAAGACGGAACCTGCTAAACCTGCATGTGATATTGTCAAGATTGTAAAGCCGGTAGAATATCAAGCTGCGGTAACAAGCCCCATGCAGGATGTTTCAGTGACTTTTGAGGCTTTAAGGTCGGATGGATCAGAAGTTACGGTCGATAATAAATATCTCAAAACATATCATCCGATCCTATTGATTGATTACTATGAGCAGCATCTGCGCTACACTCCGAAACCAACGTGA 1386 0.4315 MKGEEEMIKTTTSTLEAPSDVPAAEGSEGNGNGADDGVDGEKDGSFTEKENTQLEKEGNEDNQAEDSEEDESDEEQQENGVDDPELEQNIPSLDDGFYEVEVIRRKRTRKGKLEYFVKWLGWDESANTWEPPENLVGVPEIIEAFESSKSEKQRKRKRKEVVHSAPLKKRVERSATPYSLRCLKTSAPTKNNSQAAQNNSQSAPLEEKPITPAIPDIPAFPQTVLFADEVESDGDGNSLKRTDYADGSRSENLPEEVPLNNEEKEYDPKLSELKAATTNGNGVDNLAIPFQEAIVSPENTQMNDQPNAVGAEPITENNVVGTEQVQNGPSRSANRRRKSLSVKRFKIDSCDNKLGNTQTPNSAPVGTAEPTQTGVTDNVAAPNSHTKTEPAKPACDIVKIVKPVEYQAAVTSPMQDVSVTFEALRSDGSEVTVDNKYLKTYHPILLIDYYEQHLRYTPKPT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00252 461 CDD CD_CSD 98 147 - -
Trre15g00252 461 SMART chromo_7 97 150 IPR000953 -
Trre15g00252 461 MobiDBLite consensus disorder prediction 61 82 - -
Trre15g00252 461 SUPERFAMILY Chromo domain-like 85 152 IPR016197 -
Trre15g00252 461 MobiDBLite consensus disorder prediction 35 60 - -
Trre15g00252 461 MobiDBLite consensus disorder prediction 233 266 - -
Trre15g00252 461 MobiDBLite consensus disorder prediction 1 96 - -
Trre15g00252 461 Pfam Chromo (CHRromatin Organisation MOdifier) domain 98 147 IPR023780 -
Trre15g00252 461 SMART ChS_2 386 459 IPR008251 GO:0005634
Trre15g00252 461 MobiDBLite consensus disorder prediction 185 206 - -
Trre15g00252 461 MobiDBLite consensus disorder prediction 351 391 - -
Trre15g00252 461 Gene3D - 92 164 - -
Trre15g00252 461 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 31 459 IPR044251 GO:0006325|GO:0031507
Trre15g00252 461 ProSitePatterns Chromo domain signature. 115 135 IPR023779 -
Trre15g00252 461 MobiDBLite consensus disorder prediction 148 170 - -
Trre15g00252 461 ProSiteProfiles Chromo and chromo shadow domain profile. 98 157 IPR000953 -
Trre15g00252 461 MobiDBLite consensus disorder prediction 229 266 - -
Trre15g00252 461 MobiDBLite consensus disorder prediction 185 217 - -
Trre15g00252 461 MobiDBLite consensus disorder prediction 351 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00252 Trre-Chr15 1744653 1748045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00252 - - tpra:123883253 749.199