Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00228 ATGGACCTCAAAGAAGCTGTTAAGGACAAAATTCCCTGGGATGGAACACTCTCTTTAAATGATTTTTCCCTTTCTGCTTCTACATTTTCTGATAAGTGGAAAATGTTCAATCCTTTATTTCCTCCATGGCTGTGGACCACTTGTCCAAAACACCATTTGAGTTCTTCTCATAAGGTGGAAGGATACTTATCACTTGAGAATGTATGCCTTGTCAAATCAAGCGAGGAAGAAGAGAACCGCAAAAGTCTGACATGGAAAGAAGAGAGCAACATCTCACAGACAGAAGAGCCCTTTGATCATGCAACTTTAGTTTGTCCAGAGTATGAAGCAAACCACTATGATTTTCACATTGTCTACAGTCCTTCATATAGAGTTCCGGTGTTGTACTTCCGTTCGTACCATAGTGATGGACAGCCTTTGTCGCTCAGCGAAATCGAAAAGGATCTTCCTGGTCATTCTGCAGAGTTGCTACTAGAATCAAAATGGACATTTATAACTCAAGAGGAACACCCATATTTGAACAGACCATGGTACAAGTTACATCCATGTGGGACAAGGGACTGGATGAAACTGCTCTTAAGCAGTGATACATATACATCTCCAAATAAAAACTTCATCGAACAATATCTAATGTCTTGGTTTTCGGTTGTTGGTCAAGCAGTTGGTCTTAAAATGTCTTTGGAAATGTTCAATATTGTAGTTTAA 705 0.3943 MDLKEAVKDKIPWDGTLSLNDFSLSASTFSDKWKMFNPLFPPWLWTTCPKHHLSSSHKVEGYLSLENVCLVKSSEEEENRKSLTWKEESNISQTEEPFDHATLVCPEYEANHYDFHIVYSPSYRVPVLYFRSYHSDGQPLSLSEIEKDLPGHSAELLLESKWTFITQEEHPYLNRPWYKLHPCGTRDWMKLLLSSDTYTSPNKNFIEQYLMSWFSVVGQAVGLKMSLEMFNIVV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00228 234 Gene3D - 55 223 - -
Trre15g00228 234 PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 10 232 - -
Trre15g00228 234 Pfam Autophagocytosis associated protein, active-site domain 29 224 IPR007135 GO:0019787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00228 Trre-Chr15 1556734 1558364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00228 K17888 - gmx:100808589 374.015