Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00227 ATGGCATTACAGTTACGAGGTTTGCATAGCGAGACAACCACAAATTTCTTTTCTTTGTTACGAAATCTCAATTTTCCAGCCACAGTGAGATGGGTCAGTGGTGAAATACCAGTTAAAGCTTCCTTTAGAAGCTATGCTACTGCGAAATCTGAAAAGATTATACCAATAAAAAAGAAAAAGAGGCTGGATGAAGTATGCCTTGAAAAATATCAGCAATATAGTAGATCCATCATCCAGTCATGGATTTTGCAAGGAAAAGTATATGTGAATGGGAAGGTGATTAATAAAGCCGGTACCCCTGTGTCTGAAAAATCTGTAGTGGAGATAATTGCTGAAGTTCCCAAATATGTATGTAGAGCTGGACATAAGTTGGAAGGTGCCATTGAACAGCTCGGTGTTGATGTTGCTGGTAAAGTGGCTCTTGATTCTGGGCTATCAACTGGAGGGTTTACTGACTGCTTACTTCAGTATGGTGCATCACATGTTTATGGGGTCGATGTAGGCTATGGACAGGTAGCAGAAAAAATACGAAGAGATGAACGTGTATCTATTATAGAGCGGACAAATTTAAGATATCTCAAAGAACTCCCCCAAAATGTTGATTTGGTGACACTAGACCTCTCGTTCATCTCTATTCTTACGGTCATGCCTGCAGTGGTAAATGTTATGAAGGAAGATGCTGTATTAGTGACCTTGGTTAAACCACAATTTGAAGCTCAGAGATCTCAAGTAGGAAAGGGAGGGATAGTGAAAGATCCCGTTGTCCATCAAGAGGTTCTTGAGAAAATTACAAAGGGAGTAGAGAGTTTTGGTTTCTGCAGCAAAGGTTGGATTGAGTCTCCTCTAAAAGGTGCCGAGGGTAATACAGAATTCCTTGTTCACTTTAACAGAATCCATAACAAAAGTGCTTAA 912 0.4002 MALQLRGLHSETTTNFFSLLRNLNFPATVRWVSGEIPVKASFRSYATAKSEKIIPIKKKKRLDEVCLEKYQQYSRSIIQSWILQGKVYVNGKVINKAGTPVSEKSVVEIIAEVPKYVCRAGHKLEGAIEQLGVDVAGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVAEKIRRDERVSIIERTNLRYLKELPQNVDLVTLDLSFISILTVMPAVVNVMKEDAVLVTLVKPQFEAQRSQVGKGGIVKDPVVHQEVLEKITKGVESFGFCSKGWIESPLKGAEGNTEFLVHFNRIHNKSA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00227 303 Pfam S4 domain 61 106 IPR002942 GO:0003723
Trre15g00227 303 SMART s4_6 60 125 IPR002942 GO:0003723
Trre15g00227 303 NCBIfam TlyA family rRNA (cytidine-2'-O)-methyltransferase 61 290 IPR004538 -
Trre15g00227 303 CDD S4 61 109 - -
Trre15g00227 303 SUPERFAMILY Alpha-L RNA-binding motif 59 112 - -
Trre15g00227 303 PIRSF TlyA 56 303 IPR004538 -
Trre15g00227 303 Gene3D - 49 116 IPR036986 GO:0003723
Trre15g00227 303 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 55 301 IPR047048 GO:0008168
Trre15g00227 303 CDD AdoMet_MTases 141 231 - -
Trre15g00227 303 Pfam FtsJ-like methyltransferase 116 296 IPR002877 GO:0008168|GO:0032259
Trre15g00227 303 Gene3D Vaccinia Virus protein VP39 119 303 IPR029063 -
Trre15g00227 303 ProSiteProfiles S4 RNA-binding domain profile. 60 120 - -
Trre15g00227 303 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 296 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00227 Trre-Chr15 1553217 1556338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00227 K06442 - gmx:100781303 486.108