LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00225	ATGACTATTCAAGCCTTTCATGCTTCTTCTTCTTGTTACTTCAATTCCCACCTTCATTCTTGTTCCACAAAGCGTTTACCTTCAAGGAAGTATCTGAAGTTGAAGTGTAGTAGTACTTCTTCAAATAGCAACAATGGAAAAAGAGACAAAGATGATTATCTTCTGGATGCTCCTGTTTCTGTTGGTGATGGTTTCTCTTTCAGTGGAGGAAAATATTCAGATGGGCCTAATCCAAGTGATGAATGGTTCAAGCAAGGTAAAATGATTAAAGCCTATTCAACTCCTGGAACTGGTGAAAAGGCGAAAGATCCAATTTTCGGGCTAACAATGGGCACTAGTTCTCAAGCTACCGGAGATCGTTTCAGATGGTTTTGTGTTGAAAAAGGAAATGCTGATAATCCTTCAGTCATATTAATCCATGGTTTCCCTTCACAGGCATATTCATATCGCAAAGTACTTCCGGTACTCTCCAAGAACTATCATACCATAACATTTGATTGGCTAGGATTTGGATTTTCTGATAAGCCTCAACCAAAATATGGATTTGACTACACCCTTGATGAATATGTGTCATCCTTGGAGTCACTTATTGATGAACTTGCTGTTACTAAAGTCTCACTTGTTGTCCAGGGATATTTTTCACCAGTTGTTGTTAAGTATGCCAGCATTCACCCGGAGAAGATTAACAACTTAATACTCATTAATCCACCTTTAACAGCTCAACATGCCAAGCTTCCATCAACATTGTCCATATTCAGCAATTTTCTGCTAGGTGAAATATTTTCACAGGATCCATTAAGAGCCAGTGACAAAGCCCTAACAAGCTGTGGACCTTACAAAATGAAAGAAGAAGATGCAATGGTCTATAGAAGACCCTATCTCACATCTGGCTCTTCAGGCTTTGCATTGAATGCAATTGCCAGGACCATGAAAAAAGACCTAAAGAGGTATGTGGAGGATATGCAGAGAATACTGAACGACAAAAGTTGGAACGTTCGAACCACGATATGTTGGGGCCAGAGAGATCGATGGTTAAGTTATGATGGAGTGGAAGATTTCTGCAAAGGTTCAAATCATAAACTTATTGAAGTTCCAAGGGCTGGACATCATGCACAAGAAGATTGCGGCGAAGATATTGGACAACTTATTTATGGAATAATAAGCAAATGA	1170	0.3923	MTIQAFHASSSCYFNSHLHSCSTKRLPSRKYLKLKCSSTSSNSNNGKRDKDDYLLDAPVSVGDGFSFSGGKYSDGPNPSDEWFKQGKMIKAYSTPGTGEKAKDPIFGLTMGTSSQATGDRFRWFCVEKGNADNPSVILIHGFPSQAYSYRKVLPVLSKNYHTITFDWLGFGFSDKPQPKYGFDYTLDEYVSSLESLIDELAVTKVSLVVQGYFSPVVVKYASIHPEKINNLILINPPLTAQHAKLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYKMKEEDAMVYRRPYLTSGSSGFALNAIARTMKKDLKRYVEDMQRILNDKSWNVRTTICWGQRDRWLSYDGVEDFCKGSNHKLIEVPRAGHHAQEDCGEDIGQLIYGIISK	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00225	389	PANTHER	HYDROLASE-RELATED	114	384	-	-
	Trre15g00225	389	Pfam	alpha/beta hydrolase fold	134	373	IPR000073	-
	Trre15g00225	389	SUPERFAMILY	alpha/beta-Hydrolases	115	388	IPR029058	-
	Trre15g00225	389	Gene3D	alpha/beta hydrolase	110	384	IPR029058	-
	Trre15g00225	389	PRINTS	Alpha/beta hydrolase fold signature	221	234	IPR000073	-
	Trre15g00225	389	PRINTS	Alpha/beta hydrolase fold signature	334	348	IPR000073	-
	Trre15g00225	389	PRINTS	Alpha/beta hydrolase fold signature	159	174	IPR000073	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00225	Trre-Chr15	1545431	1549251	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g00225	123	389	Acyl Lipid Metabolism Gene Families	AT3G51000	25.566	6.48e-10	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00225	-		-	gmx:100809126	655.981