Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00172 ATGGAAAGTTTAATCGGATTGGTGAACAGAATCCAACAAGCTTGTACTAAGCTTGGTGACTATGGCGGTTCTGATAACAACAACACCTTCTCTTCTCTCTGGGAAGCTCTTCCTTCCGTTGCTGTCCTCGGTGGTCAGAGTTCAGGTAAATCTTCGGTTTTAGAAAGCATCGTTGGACGTGACTTTCTACCTAGAGGATCAGGGATTGTGACGAGGCGTCCGTTGGTGTTGCAGCTTCATAAGATAGAAGATGGTGAAAAGGAGTATGCTGAGTTTCTTCATAGACCAGGGAGAAAGATAACCGATTTTGCCGTAGTACGCCAAGAGATTCAGGATGAAACTGATAGAATTACGGGAAAGACAAAGCAAATATCTCCTATTCCAATTCATCTTAGTATTTATTCATCAAAAGTTGTCAACCTAACTTTGATTGATTTACCGGGGTTGACTAAAGTTGCTGTAGACGGACAACCTGAGAGTACTGTTCAAGATATTGAAGATATGGTTCGATCTTATGTTGAGAAGCCTAATTGTATCATACTCGCTATATCTCCGGCCAACCAGGACATAGCAACTTCCGATGCTATCAAACTTTCTAAGGAAGTGGATCCCTCAGGTGAGAGGACATTTGGAGTGTTGACAAAGCTGGATTTGATGGATAAAGGAACTAATGCATTGGATGTCCTAGAAGGGAGATCTTATCGTCTGCAACATCCTTGGGTTGGTATAGTAAATCGATCTCAAGCAGATATCAACAAAAATGTTGATATGATTGTTGCTAGACGCAAGGAGGTCGAGTATTTTGAAACCAGTCCGGACTATGGCCATTTAGCCAGTAAAATGGGTTCAGAGTACCTTGCAAAACTTCTCTCAGAGCATTTGGAGAAAGTAATTAAAGCACGGATACCTAGTATAACATCTTTGATAAACAAAAGCATCGAAGAACTTGAATCAGAGATGGATCATCTTGGGAGACCAATTGCTGTTGATGCGGGGGCGCAACTATACACCATCCTTGAACTTTGCCGCAAATTTGAGCGGGTATTCAAAGAGCATTTAGATGGAGGGCGGTCAGGAGGAGATAGAATATATAATGTATTTGACAATCAGCTTCCTGCTGCTTTACGGAAGCTTCCGATTGACAAACATCTGTCTCTTCAGAATGTGAAGAGAGTGGTGTCAGAGGCAGATGGTTACCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGGCGACTGATTGAGGGGACTCTCAGTTTCTTTAGAGGCCCAGCCGAAGCTTCAGTTGATGCTGTTCACTTTGTTTTAAAAGAACTTGTGAGAAAATCAATCGGTGAAACTGAGGAACTTAGACGTTTCCCTACTTTTCAAGCCGAACTAGCTACAGCTTCAAATGAGGCTCTAGAGAGGTTCCGCGACGAGAGTAAGAAGACAACTATTCGGCTTGTGGATATGGAGTCTTCGTATCTTACTGTGGATTTCTTCAGGAAACTTCCTCAAGAAATGGAGAGAGCTGGTAATCCAGCTCAACCTACTAAATCAGCTCAACCTACTAATCCAGCTCAACCTAGTAAATCAGCTCAACCTACTTATCCAGCTCAACCCACTGATCCATCTAATCGTGCTGGCTCAAATGATGATCGATATGGTGATGGGCATTTTAGAAGGATTGGATCAAATGTGTTATCTTACATAGGTATGGTGTCGGAAACACTCAGGATCACTATTCCAAAGGCTGTGGTTTATTGTCAGGTCAGAGAAGCAAAACAATCATTGCTAAACTATTTCTACACACAAATAGGGAAGAAAGAGGCTAAGCAATTATCAGAGTTGTTAGACGAAGATCCTACCGTGATGGAGAGAAGACAACAATGTTTTCAAAGGCTTGAACTATATAAAGCAGCAAGGGATGAAATTGATTCGGTTTCTTGGGTACGATGA 1941 0.4225 MESLIGLVNRIQQACTKLGDYGGSDNNNTFSSLWEALPSVAVLGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKIEDGEKEYAEFLHRPGRKITDFAVVRQEIQDETDRITGKTKQISPIPIHLSIYSSKVVNLTLIDLPGLTKVAVDGQPESTVQDIEDMVRSYVEKPNCIILAISPANQDIATSDAIKLSKEVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEVEYFETSPDYGHLASKMGSEYLAKLLSEHLEKVIKARIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRKFERVFKEHLDGGRSGGDRIYNVFDNQLPAALRKLPIDKHLSLQNVKRVVSEADGYQPHLIAPEQGYRRLIEGTLSFFRGPAEASVDAVHFVLKELVRKSIGETEELRRFPTFQAELATASNEALERFRDESKKTTIRLVDMESSYLTVDFFRKLPQEMERAGNPAQPTKSAQPTNPAQPSKSAQPTYPAQPTDPSNRAGSNDDRYGDGHFRRIGSNVLSYIGMVSETLRITIPKAVVYCQVREAKQSLLNYFYTQIGKKEAKQLSELLDEDPTVMERRQQCFQRLELYKAARDEIDSVSWVR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00172 646 Gene3D Dynamin, middle domain 329 612 - -
Trre15g00172 646 CDD DLP_1 37 303 IPR001401 GO:0003924|GO:0005525
Trre15g00172 646 ProSiteProfiles GED domain profile. 554 646 IPR020850 -
Trre15g00172 646 Gene3D - 1 312 IPR027417 -
Trre15g00172 646 Pfam Dynamin family 40 215 IPR045063 -
Trre15g00172 646 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Trre15g00172 646 MobiDBLite consensus disorder prediction 507 543 - -
Trre15g00172 646 Pfam Dynamin GTPase effector domain 552 642 IPR003130 GO:0003924|GO:0005525
Trre15g00172 646 Pfam Dynamin central region 224 492 IPR000375 -
Trre15g00172 646 PANTHER DYNAMIN 2 642 IPR022812 -
Trre15g00172 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 311 IPR027417 -
Trre15g00172 646 PRINTS Dynamin signature 204 220 IPR022812 -
Trre15g00172 646 PRINTS Dynamin signature 135 152 IPR022812 -
Trre15g00172 646 PRINTS Dynamin signature 185 203 IPR022812 -
Trre15g00172 646 PRINTS Dynamin signature 62 79 IPR022812 -
Trre15g00172 646 PRINTS Dynamin signature 37 55 IPR022812 -
Trre15g00172 646 PRINTS Dynamin signature 227 246 IPR022812 -
Trre15g00172 646 FunFam dynamin-related protein 1E 1 312 - -
Trre15g00172 646 MobiDBLite consensus disorder prediction 503 552 - -
Trre15g00172 646 SMART GED_2 549 642 IPR003130 GO:0003924|GO:0005525
Trre15g00172 646 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 303 IPR030381 GO:0005525
Trre15g00172 646 SMART dynamin_3 1 254 IPR001401 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00172 Trre-Chr15 1220828 1226122 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00172 - - gmx:100794878 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00172 15 1220828 1226122 Trre15g00172 15 1220828 1226122 ECH