Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00170 ATGCCGATCTTCTGGAACCACATGAGATCATCATCCTCTCCGTTACTTCAACGCCTCAAACGCCATGTCACCGGCGGCCATTTCTTACTCTCACGAATTTTCACGACGTTGGAAGGTCATCGTCCCACCATCGTCCATAAACGTAGTCTCGACATTCTTCACGATCCTTGGTTCAATAAAGGAACAGCTTTTTCCATGACTGAACGAGACCGTCTTGATCTACGAGGATTGCTTCCTCCAAATGTTGTGTCTCCTGATGTACAAATTGAGCGCTTCATGGTTGATTTGAAAAGGCTTGAAGTTCAAGCAAGAGATGGACCTTCCGATCCTAATGCACTGGCCAAGTGGCGGATATTAAACCGTTTGCATGACAGAAATGAGACTATGTACTACAAAGTTTTGATTGCTAACATCGAGGAATATGCACCAATAGTATATACTCCAACTGTGGGACTTGTATGTCAGAACTATAGTGGACTTTTTAGAAGGCCAAGAGGAATGTATTTCAGCGCTCAGGATCGTGGGGAAATGATGTCCATGGTCTATAACTGGCCAGCCGAGCAGGTCGATATGATTGTAGTTACTGACGGGAGCAGAATTTTGGGACTTGGAGATCTTGGAGTACAAGGAATAGGCATTGCCATTGGGAAGCTTGATCTATATGTTGCTGCTGCTGGGATAAATCCTCAAAGGGTGCTCCCTGTGATGATTGACGTTGGTACTAACAACAAAAAGTTACTTGAAGATCCCTTATATTTAGGATTGCAGCAGCATCGCCTTGATGGGGATGACTATCTTGCTGTTATAGATGAATTCATGGAAGCTGTCTTTACTCGCTGGCCAAATGTGATTGTACAGTTTGAAGATTTTCAAAGCAAATGGGCTTTTAAGTTATTACAAAGGTACAGAACTACCTACCGAATGTTTAATGATGATGTGCAGGGGACAGCTGGTGTTGCAATTGCTGGACTACTAGGTGCTGTAAGAGCTCAAGGAAGGCCAATGATTGACTTCCCAAAGCAGAGGATAGTTGTTGCTGGTGCTGGAAGTGCCGGAATTGGCGTTCTTAATGCAGCAAGAAAAACAATGGCAAGGATGCTGGGTAATAATGAAGTTGCTTTTCAGAGTGCAAAGAGTCAATTTTGGGTTGTTGATGCAAAGGGGTTAATCACAGAAGGACGTGAAAATATTGATCCAGATGCCCTTCCTTTTGCAAGAAGTTTGAAAGAAATGGATCGCCAAGGACTAAGGGAAGGAGCAAGTCTTGCGGAAGTGGTCAAGCAAGTGAAGCCTGATGTCCTCCTAGGACTATCTGCTGTTGGAGGATTGTTCTCAACGGAGGTATTGGAGGCCCTCAAGGGTTCAACGTCGACAAGACCAGCCATATTTGCCATGTCAAATCCAACAAAGAATGCTGAATGCACCCCTGAAGAAGCATTCTCCATTTTGGGCGACAACATGATATTTGCAAGTGGAAGTCCGTTTAGTAATGTGGATCTCGGAAATGGTCATATTGGACACTGCAACCAGGGAAACAACATGTACCTATTTCCAGGTATTGGTCTTGGAACTCTTCTGTCTGGCTCAAGGATCGTATCCGATGGCATGTTACAGGCTGCTGCTGAGCGTTTGGCTGCATATATGAGTGAAGAGGAGGTCCTTAAAGGGATTATTTTCCCTTCAATATCCAGGATTCGAGATATTACAAAGGAGGTTGCTGCAGCTGTTATAGAAGAAGCTGTGGAGGAGGATCTAGCAGAAGGATATCACGAAATGGATGCTCGAGAGCTCCGCAAACTTAGCCCGGATGAAATTAAGGAATATGTGGTGAATAACATGTGGAATCCAGAGTACCCAACATTAGTATACAGGAAAGAGTGA 1881 0.4428 MPIFWNHMRSSSSPLLQRLKRHVTGGHFLLSRIFTTLEGHRPTIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVVSPDVQIERFMVDLKRLEVQARDGPSDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAQDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNKKLLEDPLYLGLQQHRLDGDDYLAVIDEFMEAVFTRWPNVIVQFEDFQSKWAFKLLQRYRTTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQRIVVAGAGSAGIGVLNAARKTMARMLGNNEVAFQSAKSQFWVVDAKGLITEGRENIDPDALPFARSLKEMDRQGLREGASLAEVVKQVKPDVLLGLSAVGGLFSTEVLEALKGSTSTRPAIFAMSNPTKNAECTPEEAFSILGDNMIFASGSPFSNVDLGNGHIGHCNQGNNMYLFPGIGLGTLLSGSRIVSDGMLQAAAERLAAYMSEEEVLKGIIFPSISRIRDITKEVAAAVIEEAVEEDLAEGYHEMDARELRKLSPDEIKEYVVNNMWNPEYPTLVYRKE 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00170 626 CDD NAD_bind_1_malic_enz 313 616 - -
Trre15g00170 626 PANTHER MALIC ENZYME-RELATED 41 618 - -
Trre15g00170 626 FunFam Malic enzyme 47 310 - -
Trre15g00170 626 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 33 312 IPR046346 -
Trre15g00170 626 Pfam Malic enzyme, NAD binding domain 313 580 IPR012302 GO:0051287
Trre15g00170 626 FunFam Malic enzyme 311 625 - -
Trre15g00170 626 ProSitePatterns Malic enzymes signature. 309 325 IPR015884 GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 189 218 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 309 325 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 343 359 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 129 153 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 225 247 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 284 302 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 PRINTS Malic enzyme signature 457 473 IPR001891 GO:0004470|GO:0004471
Trre15g00170 626 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 313 622 IPR036291 -
Trre15g00170 626 SMART Malic_M_2 313 581 IPR012302 GO:0051287
Trre15g00170 626 Gene3D - 311 626 - -
Trre15g00170 626 Gene3D - 47 310 IPR037062 GO:0004471
Trre15g00170 626 SMART malic_2 123 303 IPR012301 GO:0004471
Trre15g00170 626 Pfam Malic enzyme, N-terminal domain 123 303 IPR012301 GO:0004471
Trre15g00170 626 PIRSF ME 9 624 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00170 Trre-Chr15 1206139 1216864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00170 K00028 - gmx:100799344 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00170 15 1206139 1216864 Trre15g00170 15 1206139 1216864 ECH