Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00108 ATGGCTCCTTTCCTTTTATTTGCGTTTGTTTTTGCTAGTCAAGTGATTGGTGGATTGAATACAAAGCTACCATCTCCAACATATGGAAAGACAATAACCATTCTTAGCATTGATGGTGGTGCCATTAAGGGGATTGTTCCTAGTGTTGTTCTTCGGCACTTGGAAAAGTCTCTTAAGGAAGTGTCAAAAGATGAAAAAGCTGCACTTGCAGATTATTTTGACGTGATAGCAGGGACTAGTACCGGAGGACTCATTGCTGCTATGCTGGCTGCACCTAACTCAAGTGACTCTTCTCGTCCTGCATTTACTGCTGAAGAAATCTTACAATTCTACTTGGATTTTAGTCCTTCTATATTCAACCAAACCGAAGCCAAAGGTTGGAATGCGCTTCTTTCCAAACGTCCGCGGTTTAGTGGCAAGTTTTTACATGATAAAGCACGTGAAATATTGGGAGAATCACGATTGAGTGATGCATTGACCAATCTTATAATCCCAACCTTTGATATCAAGAAACTCCACCCAATTATTTTCTCAACCTTTAAGTTGGATGATGTTCCTAGCCTAGATGTAAAATTGTCGGATATAACAATTGGGACTTCAGCAGCACCATCTGTACTACCGCCTTACTTCTTTGAGGATGGTGATAATGAATTCAATTTAGTTGATGGTGGTTTAGCCGCGGGCAGTCCGTCATTGGTTGCAGTGAGTGAAGTGGCACAAGAATGGAATGAGAAGAATCCAAACGAGCCTTTGAAAGTGGTGTTGTTGTCATTAGGATGTGGAAGAGAGGTGAGTGAAGGGGGTCCTAATGCCACAGAAGCAGGGTCCTTGACATTTGTTGCTGGATGGTTACCCCTTTTAGCTACAAGTCTTGCTACTGCTGCTGCAGACATAAATGAATATCACCTTGCATCAGTGTTCCCAGACCTACCTTCTTCAGACAATTACTACCTTCGAGTTGAGGAGTATAACTTGGATCCAACCATAGGCCAAGTTAATTCTACCCAAGAAAACATGGATAAACTTGTAACGGTAGGAGAAGCCTTGTTGAATCAAACTGTTAAGATACAAAATGTTACTTCTTTTGTCCCATACGAAAAACCAAGTGAGGGTACAAACGGGCAAGCTCTTGAAAGGTTGGCTAAGATTTTGTACAATGAGAAGCAATACCGTTTGAAAATGAAATCGGTGGAGAAAGGAGGACGACCATTTTGA 1215 0.4156 MAPFLLFAFVFASQVIGGLNTKLPSPTYGKTITILSIDGGAIKGIVPSVVLRHLEKSLKEVSKDEKAALADYFDVIAGTSTGGLIAAMLAAPNSSDSSRPAFTAEEILQFYLDFSPSIFNQTEAKGWNALLSKRPRFSGKFLHDKAREILGESRLSDALTNLIIPTFDIKKLHPIIFSTFKLDDVPSLDVKLSDITIGTSAAPSVLPPYFFEDGDNEFNLVDGGLAAGSPSLVAVSEVAQEWNEKNPNEPLKVVLLSLGCGREVSEGGPNATEAGSLTFVAGWLPLLATSLATAAADINEYHLASVFPDLPSSDNYYLRVEEYNLDPTIGQVNSTQENMDKLVTVGEALLNQTVKIQNVTSFVPYEKPSEGTNGQALERLAKILYNEKQYRLKMKSVEKGGRPF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00108 404 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 35 235 IPR002641 GO:0006629
Trre15g00108 404 PANTHER XYLOSE ISOMERASE 22 392 - -
Trre15g00108 404 SUPERFAMILY FabD/lysophospholipase-like 31 357 IPR016035 -
Trre15g00108 404 Gene3D Cytosolic phospholipase A2 catalytic domain 22 397 - -
Trre15g00108 404 Pfam Patatin-like phospholipase 35 234 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00108 Trre-Chr15 754613 760228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00108 23 391 Miscellaneous Gene Families AT2G26560 42.317 9.62e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00108 - - cam:101513147 508.834