Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00101 ATGATGACGAGCATCAGTATCATGGCTCTGCCACTTGTCATCTCCGTTTTCAAACCTCTCACCACCACCACCACCACCACCCTCCTCCACCACTCCACACTCCTACGCCGCCGTCGTTTCACTACTATTCCTACTCTCTCCGCCACCACCACTCCTTCACATTCAACTTCTCTCTCTCATCAATCTTCTTCTTCTTCTCCTCAAAAGCTTCCATCTCTCACTTTCCAGCAAGCCATTCAACGTCTTCAGGAATATTGGGCTTCTGTTGGATGTTCCATAATGCAATGCAGCAACACTGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTCGGACCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGGTATGGAGAAAACCCAAATAGGCTCCAAAGGCATACTCAATTTCAGGTAATATTGAAGCCTGATCCTGGAAATTCGCAGGACCTTTTTATCCGCAGCCTTTCAGCTTTAGGTATTGATGTTGCTGCACATGATATACGGTTTGTGGAGGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGCTTGGGATGGGAAATCTGGATGGATGGAATGGAGATTACTCAATTCACCTACTTTCAGCAGGCTGGAAGTCTCTCGTTATCACCAGTATCGGTAGAAATCACATATGGCCTGGAGCGTATCCTCATGTTACTGCAGGGTGTTGATCACTTCAAAAAGATCAAATATTCTGATGGAATCACTTACGGAGAATTATTCTTGGAGAATGAAAAGGAAATGAGTGCTTATTATTTGGAGCATGCTAGTGTTGATCATCTTCAAAAACATTTTGATTTCTTTGAGGAGGAATCTCGTCGTTTACTTTCTTCAGGCCTTGCGATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATTTTAGACGCCAGAGGCTTTGTTGGAGTAACTGAGCGTGCTCGATATTTTGGTCGCATGCGCAGTTTAGCTCGTCAGTGTGCCCAACTTTGGTTGAAGACTAGGGAGATGCTTGGCTTCCCGCTTGGTTGCATCTCAGAACCTGATCAGTCTGTTGTGCCAAAGGATGTTTTGAAGGCTGCATGTGAGAAGGTTCATGATCATGCAAGAGCATTTGTTCTTGAAATTGGAACTGAAGAGTTGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGAAAGATTTAATATTGCAATTACTGGAACGACAGAGGTTAAAGCATGGTGAAGTGCAGGTTTTTGGCACCGCAAGGAGACTAGTGATTTCTGTTGAAAATCTTGTCACGAAACAAACAGGACAAGAGGTTGAGGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCAAGAAGGAAATCCAACAAAGGCTGCTGAGGGTTTTTCCCGTAGATATTCTGTTCCACTGGACTTGGTATACAGAAAGGTTGATGGGAAAACAGAATATATATATGCTCGCATAAAAGAGTCTTCAAGACATGCATTGGAGGTTTTATCTGATGATTTGCCTGCTACTATTGCCAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCACAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCCTTGCATGGAGATGTTGTGGTCCCATTTTGGTTTGCTGGTGTAATGAGTGGAAATTCGTCCTGCGGCCTTCGTAATACTACTTCAGCTGTTGTCCAGATAGAAAACGCAGAATCTTATTCAGTTGCAATAAGAAATGCTGGAGTCAATGTTGTAGTTGAGGACCGTAAGAAAACAATTGTAGAGCAATCTAATACATTAGCAGAAAGTGTAAATGGCCAACTTCTGATTCCGAAAGGTTTGCTTGATGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAGGATCTTTTGACTATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGTGATTCTAATGGACAATTGCTGCCTTACTTTATTGCTGTTGCAAATGGAGCAATTGATGAAGCTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGTTGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAACTTGGAACCATGCTGGATAAAATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCCTCCTGGATATCAATGAAGATACACAACAAACTATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTGCCACATCAGTTGTCACTGAATTTACTGCACTTTCAGGAGTGATGGGACGTCACTATGCCCTTCGAGATGGATACTCTGAGCAGACCGCAGAGGCTTTGTTTGAGATCACACTTCCTAGATTTTCGGGGGACATAGTTCCTGAAAGCGACGCCGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTCACCGCTGGTTGTCAACCTAGTTCTACAAATGATCCATTTGGTCTACGAAGAATCTCATATGGTCTCGTGCAATTGTTGGTGGAAAAGAATAAAAACCTAGATTTTAAAGAAGCTCTGGAACTTGCTGCAGATGTCCAGCCAATCAAAGTAAATCCTCAAGTAATAGACGAAGTACGTCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTGGACAAGGGTGTGAGTGCAGAAATTGTTCGTTCCATCCTTGCAGAGAGGGCTAATTTTCCCTGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAAAGGCGAGCTTTTTCCTAAAGTAGTTGAAGCATACTCTCGCCCAACTAGAATTGTCCGTGGGAAGGAAATTGAGTTTCATACGGAGGTGGATGAGTCTGCCTTTGAGACAAATGAAGAGAGAGTTTTGTGGAACGCATTTTTGTCTGTTAAAAAGAGTATCAATCCTGGTCTTGACATAGATGATTTTGTTGAAATTTCATCCCAACTTATACAACCACTTGAGGATTTCTTTAATAATGTCTTCGTAATGGTGGATGATGCTAAGATCAGAAATAACAGGCTAGCTCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATTGCAGACCTTACATTGTTACCTGGATTTTAA 3210 0.4227 MMTSISIMALPLVISVFKPLTTTTTTTLLHHSTLLRRRRFTTIPTLSATTTPSHSTSLSHQSSSSSPQKLPSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVAAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLSLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHLQKHFDFFEEESRRLLSSGLAIPAYDQLLKTSHAFNILDARGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGCISEPDQSVVPKDVLKAACEKVHDHARAFVLEIGTEELPPQDVVDASKQLKDLILQLLERQRLKHGEVQVFGTARRLVISVENLVTKQTGQEVEVRGPPVSKAFDQEGNPTKAAEGFSRRYSVPLDLVYRKVDGKTEYIYARIKESSRHALEVLSDDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFWFAGVMSGNSSCGLRNTTSAVVQIENAESYSVAIRNAGVNVVVEDRKKTIVEQSNTLAESVNGQLLIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDSNGQLLPYFIAVANGAIDEATVRKGNEAVLRARYEDAKFFYELDTRKRFSEFREQLKNILFHEKLGTMLDKMTRVENMVTKLSCLLDINEDTQQTIREAASLAMSDLATSVVTEFTALSGVMGRHYALRDGYSEQTAEALFEITLPRFSGDIVPESDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKEALELAADVQPIKVNPQVIDEVRQFVTRRLEQFLVDKGVSAEIVRSILAERANFPCLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKEIEFHTEVDESAFETNEERVLWNAFLSVKKSINPGLDIDDFVEISSQLIQPLEDFFNNVFVMVDDAKIRNNRLALLKGIAELPKGIADLTLLPGF 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00101 1069 Pfam Glycyl-tRNA synthetase alpha subunit 75 352 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 Pfam Glycyl-tRNA synthetase beta subunit 388 932 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PANTHER GLYCYL-TRNA SYNTHETASE 73 1067 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 Gene3D Class II aaRS and biotin synthetases; domain 2 277 356 - -
Trre15g00101 1069 SUPERFAMILY Class II aaRS and biotin synthetases 74 352 IPR045864 -
Trre15g00101 1069 Hamap Glycine--tRNA ligase beta subunit [glyS]. 385 1066 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 FunFam Glycine--tRNA ligase alpha subunit 67 276 - -
Trre15g00101 1069 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 74 348 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 CDD GlyRS_alpha_core 74 352 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PRINTS Glycyl-tRNA synthetase alpha subunit signature 127 142 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PRINTS Glycyl-tRNA synthetase alpha subunit signature 205 225 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PRINTS Glycyl-tRNA synthetase alpha subunit signature 228 243 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PRINTS Glycyl-tRNA synthetase alpha subunit signature 148 168 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PRINTS Glycyl-tRNA synthetase alpha subunit signature 313 329 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 PRINTS Glycyl-tRNA synthetase alpha subunit signature 179 203 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 NCBIfam glycine--tRNA ligase subunit alpha 74 358 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 MobiDBLite consensus disorder prediction 45 70 - -
Trre15g00101 1069 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 73 353 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 FunFam Glycine--tRNA ligase, chloroplastic/mitochondrial 2 277 356 - -
Trre15g00101 1069 SUPERFAMILY HD-domain/PDEase-like 720 849 - -
Trre15g00101 1069 Gene3D Bira Bifunctional Protein; Domain 2 59 276 IPR045864 -
Trre15g00101 1069 NCBIfam glycine--tRNA ligase subunit beta 388 1065 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Trre15g00101 1069 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 742 1031 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00101 Trre-Chr15 708910 722428 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00101 K14164 - gmx:100787365 1783.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00101 15 708910 722428 Trre15g00101 15 708910 722428 ECH