Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00100 ATGAACGGCGAAGAAGAAGAAGAAGAAGAAGAAGTAGCTGAAGAAGTTGAAGCCATGAAAGCTGTTTATGAAACCGATTGTCTCATTCTTCGTTCAATTCCTCCTCACTTTCACCTATCCCTCAAACCCAGAACCGCTGATGTTTCCTATGACCAGTTTGTAGAAATTGTTCTTGAGGTACGAGCAACCCCACAGTATCCAAAAGAACCACCTTTTGTTGCTCTAGTGGATTCCAAGGGTCTGGATCAACAAAGACAAAAGCATTTGTTGAACCATATAGAAAGTAAAGCCAATGAGCTCTCCCCTGGCTTAATGCTTGTAGCTCTCTGTGAGGAAGCTGCAGAAAAACTCTCAGATATGAATCATCCTGATGGTGATTGTCCATTGTGTTTATTCCCATTGGTCACAGAAGATCACCAAAGCGAAACCTTGCCTTTTATGAAGTTAATGTCCTGCTTTCATTGTTTTCACAGTGAATGTATCATTAGATGGTGGAATTGGATTCAGAGTTCTAAACAAACAGGCTCTGCCAATTCAAATAATGCAACTGTTCATCGTAACCGGGATAATCATGAAAAATCGGAAGAGGGTGTTGGAAACTGCCCTGTCTGTCGCAAACCTTTTCATGCAAAAGATTTGGACCATGTGCTTGACCTAGTTGGCTCACATTCTTCCAGAGTGAATGTGAATAATGATGAAATCGATAATGACGAGGAAATCCTTCAATCTGAGCTTGAGATCATCAGAAAACAGAAATTTGAAGCCATCTTAAGTTTACAGAAAGAGAACAATGGTTTGATTGAACCCAAAAAAGATATAGTAATATTGCCCGGTATGTATCTTCAACAACCGATTCCAGTGCCCGGTTCCACGACAACCAAGGAGCCTAACGAGGTGGAGCGACAAGAAAGAGATCCGCCTGCAGTTGAGTCAGGAAAACACGTCACCGGAACCTCAAATGGACCTAGTTCTAGCGGGAACAGAAATTTTGGCGCAAGGAGACATAGACCAAGAAGTGATAATCACTCTAGTTCAAGTGCAAGACATCCAAGAAAACCAGTCCAACAACAACAGTGGGTTAGAAGAGATAATCCTAGCAATAAGCAATAG 1110 0.4171 MNGEEEEEEEEVAEEVEAMKAVYETDCLILRSIPPHFHLSLKPRTADVSYDQFVEIVLEVRATPQYPKEPPFVALVDSKGLDQQRQKHLLNHIESKANELSPGLMLVALCEEAAEKLSDMNHPDGDCPLCLFPLVTEDHQSETLPFMKLMSCFHCFHSECIIRWWNWIQSSKQTGSANSNNATVHRNRDNHEKSEEGVGNCPVCRKPFHAKDLDHVLDLVGSHSSRVNVNNDEIDNDEEILQSELEIIRKQKFEAILSLQKENNGLIEPKKDIVILPGMYLQQPIPVPGSTTTKEPNEVERQERDPPAVESGKHVTGTSNGPSSSGNRNFGARRHRPRSDNHSSSSARHPRKPVQQQQWVRRDNPSNKQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00100 369 SUPERFAMILY UBC-like 8 117 IPR016135 -
Trre15g00100 369 MobiDBLite consensus disorder prediction 176 196 - -
Trre15g00100 369 FunFam eIF-2-alpha kinase GCN2 2 126 - -
Trre15g00100 369 Gene3D Ubiquitin Conjugating Enzyme 2 122 IPR016135 -
Trre15g00100 369 ProSiteProfiles RWD domain profile. 14 120 IPR006575 GO:0005515
Trre15g00100 369 SMART ring_2 127 204 IPR001841 -
Trre15g00100 369 MobiDBLite consensus disorder prediction 313 330 - -
Trre15g00100 369 ProSiteProfiles Zinc finger RING-type profile. 127 205 IPR001841 -
Trre15g00100 369 MobiDBLite consensus disorder prediction 348 369 - -
Trre15g00100 369 PANTHER RING FINGER PROTEIN 25 6 358 IPR039133 GO:0061630
Trre15g00100 369 Coils Coil 231 251 - -
Trre15g00100 369 MobiDBLite consensus disorder prediction 333 347 - -
Trre15g00100 369 FunFam RWD domain-containing protein 123 220 - -
Trre15g00100 369 SUPERFAMILY RING/U-box 120 211 - -
Trre15g00100 369 MobiDBLite consensus disorder prediction 296 310 - -
Trre15g00100 369 SMART RWD2001b 14 120 IPR006575 GO:0005515
Trre15g00100 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 219 IPR013083 -
Trre15g00100 369 MobiDBLite consensus disorder prediction 282 369 - -
Trre15g00100 369 Pfam RWD domain 10 116 IPR006575 GO:0005515
Trre15g00100 369 Coils Coil 2 22 - -
Trre15g00100 369 Coils Coil 367 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00100 Trre-Chr15 702274 706567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00100 K10640 - gmx:100791789 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00100 15 702274 706567 Trre15g00100 15 702274 706567 ECH