LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00086	ATGAGTGAAGAGTCTAATTCTTATGGAAAGGCTACGGATCTCTTGCATCAGCTGGAGGATATCCTTGAATCTGATGCTCTAATTGATGAGCTGGGGTTTATTCATCCATCCCAGTTTTCCTTGTTAAATGAAGAATCTGGCATTTCAGCAAATTTATCTGTTGAAGCCATCCATCAATCAGAAGACAGGATAGCAAGCTCTGACGAATACTCAAAGCAAGAGAAACTATGCTTCTGGAACAGAGATCATAAACTGGGAATTTCAACTCATGTTCTTTTACCGTTATATAAAGCAGCTAAACATGCATTTTTTACGGCATTTAAACAATACAAGATGTGTGGCAATCAATCTGACAAAGTTGGGATTTCTTTACCTGCTTTAGCATCCCATGACCATCTTGAAAGCATACTTTTAAGACACAGCAGGTCTCTTCTACTGCTAAGCTGTGATTTTATGACTGCTTGGAATTGCAGAAAGTTATTAGCGTCCAAGAAGAAGCAGATCTCAATGTTTGTAGATGAACTTCGTCTGTCAGAACTAGTGCTCTCGTGCTCACCCAAAAGTGAACAAGCTTGGAGTCATAGGCGATGGGTGATCAAGTCAATCTCTGCAAACTGTTCAAATTTCAAAGAGATTCTGGGAAATGAATCTGAGCTGGTGGAAAAAATAGCTGAGAGATCAAAGATGAATTATCGTGCATGGAATCATCGTTGCTGGTTAATCTCATACATGACCAACGAACAGGTGCTATCTGAGATGAAGAAATCGAGAAGTTGGGCTGCACTGCATGTTTCTGATCATTGTTGCTTTCATTATCGCAGACGGCTACTGCAGAAAATTATGGAGGACCAAAGTTATGCGGAAGAAACTGCATCTTATGGTTATAATGCTGATATTGTCCAAGCAGTGAAGGACGAATTTGATTGGAATGAAACATTGATAAAGCGTTATGTCGGAAGAGAGGCTCTATGGCTTCATCGTCGCTTTCTTTCCATGTGGTGGATAAATAGTTTTCCAACTGTTTCTAGTGACGAATCCTACCATTCCAAGGAGGCAACTGGCATGTATCATGACTTTGGCACCTTTCTGCAGAATGAATTATGTCTCCTTCATGTCTCAACTTCTGCTGATGATGAGTATGGGGATTTCCAAGCACAAGCCACGTATTCTGCGAGTTACATACTGTGGTTGAAAGTGCAAGTTCCGAAGCCTCTTGAAAATGAGCTCCTTGAGAAGATAAGAGAGGTAGATTTGAAGACCTTACTGGATAAGTCATGCCCAGAGAGATCCTCTCTATTCAATTACTTTATGAGCTATAGAGCTATGTGA	1329	0.4048	MSEESNSYGKATDLLHQLEDILESDALIDELGFIHPSQFSLLNEESGISANLSVEAIHQSEDRIASSDEYSKQEKLCFWNRDHKLGISTHVLLPLYKAAKHAFFTAFKQYKMCGNQSDKVGISLPALASHDHLESILLRHSRSLLLLSCDFMTAWNCRKLLASKKKQISMFVDELRLSELVLSCSPKSEQAWSHRRWVIKSISANCSNFKEILGNESELVEKIAERSKMNYRAWNHRCWLISYMTNEQVLSEMKKSRSWAALHVSDHCCFHYRRRLLQKIMEDQSYAEETASYGYNADIVQAVKDEFDWNETLIKRYVGREALWLHRRFLSMWWINSFPTVSSDESYHSKEATGMYHDFGTFLQNELCLLHVSTSADDEYGDFQAQATYSASYILWLKVQVPKPLENELLEKIREVDLKTLLDKSCPERSSLFNYFMSYRAM	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00086	442	ProSiteProfiles	Protein prenyltransferases alpha subunit repeat profile.	170	204	IPR002088	GO:0008318\|GO:0018342
	Trre15g00086	442	PANTHER	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	29	437	-	-
	Trre15g00086	442	ProSiteProfiles	Protein prenyltransferases alpha subunit repeat profile.	212	246	IPR002088	GO:0008318\|GO:0018342
	Trre15g00086	442	Gene3D	Protein prenylyltransferase	116	415	-	-
	Trre15g00086	442	Pfam	Protein prenyltransferase alpha subunit repeat	173	200	IPR002088	GO:0008318\|GO:0018342
	Trre15g00086	442	Pfam	Protein prenyltransferase alpha subunit repeat	216	244	IPR002088	GO:0008318\|GO:0018342
	Trre15g00086	442	SUPERFAMILY	Protein prenylyltransferase	135	337	-	-
	Trre15g00086	442	FunFam	Protein prenyltransferase alpha subunit repeat-containing protein 1-B isoform D	106	416	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00086	Trre-Chr15	611196	622445	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00086	K14137		-	gmx:100807426	702.975