Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00030 ATGTTCCTTTCACTAAGATACTCCTTCATGTTTCTCTTCACTTTTTTCCTCACATCAAAAGCTTCTTTACAAGATGCACCAGTCACCAAAATATCTGTCACAAACCGCAACATTCAAAGCTTCACCAATGCTGGCAGAGGCAACAGCATCACAGGAATATCACAATTCAAAGGATACTTATATCGTTTCGGATACCTTAAAAACAATGACGCATTCAGCGACAAATTTGATGCAAGTTTTGAATCAGCTCTCATCAAATACCAACAAAATCTTGGACTCCAAGTAACCGGAAAACTTGATTCCAACACAGTTTCTCAAATGATCACGCCAAGGTGCGGTGTTCCAGACACAAGAAAAACTCGCCACCATCAAAATCATATTCACAACACGACGCATTTTGTTTATTTCCCCGGAAAACCACGATGGTCACGTGACAATGACATGCCAATGACACTAACCTATGGCTTCTCACGTGACTACATGATTCACAAATTGAGCATACAAGAGATAAGAGAAACATTCAAACGAGCATTTTCTAGATGGAGTTCGGTTATTCCAATTAGTTTCGTCGAAGCAGAGGATTACGGCTTCGCAGATATAAAAATAGGATTTTATAGTGGGGACCACGGTGATGGTGAGCCATTTGATGGTGTTCTAGGTGTGCTAGCACATTCGTTTTCGCCAGAGATTGGAAGGCTTCACCTCGATGCAGCGGAGATATGGGCGGTTGATTTCAAGGTAACGAAATCGGAGGTGGCGGTTGATTTGGAGTCAGTTGCAACACACGAGATTGGACATTTGTTGGGTCTGTCACATAGTAGTGTGAAAGAAGCTGTGATGTATCCAAGTTTAAGGCCAAGAGATAAAAGAGCTGATTTGAATATTGATGATATTAAAGGTGTGCAATCCCTTTATGGTTCTAATCCTAATTTTAGATCTCAGTGGTCATTGGAATCTGATATTTCCGCAAATCATGGTCAAAAATTTGGAGTTGACACTTTCAGGTTGTCTATAATTGGTTTCATTATTGGCATTACCCTGTTTTATTTAATTTGA 1056 0.4006 MFLSLRYSFMFLFTFFLTSKASLQDAPVTKISVTNRNIQSFTNAGRGNSITGISQFKGYLYRFGYLKNNDAFSDKFDASFESALIKYQQNLGLQVTGKLDSNTVSQMITPRCGVPDTRKTRHHQNHIHNTTHFVYFPGKPRWSRDNDMPMTLTYGFSRDYMIHKLSIQEIRETFKRAFSRWSSVIPISFVEAEDYGFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAEIWAVDFKVTKSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSQWSLESDISANHGQKFGVDTFRLSIIGFIIGITLFYLI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00030 351 SUPERFAMILY PGBD-like 45 117 IPR036365 -
Trre15g00030 351 SMART col_5 138 307 IPR006026 GO:0006508|GO:0008237|GO:0008270
Trre15g00030 351 PANTHER MATRIX METALLOPROTEINASE 37 311 - -
Trre15g00030 351 Gene3D Collagenase (Catalytic Domain) 45 311 IPR024079 GO:0008237
Trre15g00030 351 CDD ZnMc_MMP 141 306 IPR033739 GO:0008237|GO:0008270
Trre15g00030 351 PRINTS Matrixin signature 259 284 IPR021190 GO:0004222|GO:0006508|GO:0008270
Trre15g00030 351 PRINTS Matrixin signature 293 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Trre15g00030 351 PRINTS Matrixin signature 174 189 IPR021190 GO:0004222|GO:0006508|GO:0008270
Trre15g00030 351 PRINTS Matrixin signature 107 120 IPR021190 GO:0004222|GO:0006508|GO:0008270
Trre15g00030 351 PRINTS Matrixin signature 198 226 IPR021190 GO:0004222|GO:0006508|GO:0008270
Trre15g00030 351 FunFam Metalloendoproteinase 1 43 311 - -
Trre15g00030 351 Pfam Putative peptidoglycan binding domain 53 107 IPR002477 -
Trre15g00030 351 Pfam Matrixin 146 306 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Trre15g00030 351 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 134 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00030 Trre-Chr15 276872 277927 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00030 - K07999 gmx:100781237 495.738