Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00026 ATGACTCTCGGTTCTTCGCGAACTATGGCCGTCTTTTCATCATCAGCTTCCAATCAGATTCGTTTCCTGCTCAACTCCTTGAACCAACTCAACTTTGACTCCGTTTTCCACCAACTCTCTCAGTTTGCTGAGTTTGGAACTGTTGGATGCATTTTGCTGCTTCAAACTTGCTTGGATCACTTTAATTATGTCAGAAGAGATAGAAAAGATATGCAACATGAGCCAATTCTTGTAGCAGTCGTTAAGTACCTCTTGAACAAACCAAACTTCAGCACAGTGTTTTCTGAGTCAATGAAGAATGTAGAAATTAATGAAAGCTTTTTAGAAAGCTTTTGTAGTGGATTACAGTTGTCTTTATTGGAAAAAATTGCCATCAGTCTTGCTTTATCTGATTCTGAAAATCCCGATGCCAGGCTATGTGGCAAGAATTTTTGCATGGCTCAGATTGAAGAATTGTGCGCGAATCCTGGTTCTTTGAGTTGCCATGAGCGAATTCATAGTGTTATCATGTTCCTCAAGCAGTCTGAGTGTCTTTCTGGGCATGTAGATTCCTTCATGCAGATATTATCGCTGGTGCAGTTCAAGGATACGCCTCCTTTTGTTTTGACCCCGTTGCTACCTGATGAGATGCATGGAGCTGATTTTTTACGGTGGAATATGGAGTTCAATGAGTGTGAAGAAAATGATTTTGATGCTATTTTGGCTGACATTCAAAAGGAAATGAATATGGGAGATATTGTGAAGGAACTAGGCTATGGATGCACAGTTGATGTCTCACAGTGCAAAGAAGTATTGTCACTCTTCTTACCTTTAACTGATAATATGCTCTCTAAGCTACTTGGTGCTATTGCACACACCCATGCCGGGCTGGAGGATAACCAGAACACATTTTTAACTTTCGGCGCGGCCCTTGGATACGACAACTTGTCCGAGTTGCCACCACTGAACTCTTGGAATATTGATGTTTTGATAGATACGGTCAAGAATATTGCACCACAAACCAATTGGGTTCGGGTTATTGAAAATCTTGATCATGAAGGATTTTACCTTCCAAGTGAAGAAGCATTCTCTTTTCTTATGTCTGTTTATAAACATGCCTGTAAGGAACCATTTCCGCTCCACGCCGTATGTGGGTCTGTCTGGAAGAATACCGAGGGTCAGCTCTCTTTCCTTAAATATGCTGTGTCTGCACCACCAGAAATGTTTACATTTGCACACTCTACGAGGCAACTGGCATATGTTGATGCTATTAATGGACACAAATTTCAAAATGGACATGCAAATCATGCATGGCTGTGTATTGACCTTTTGGATGTCCTCTGCCAGCTAGCTGAGAAGGGCCATGCCAGTGTTGTTTGGTCAATTCTTGATTATCCCCTTAAGCATTGTCCAGAAATCTTGCTTCTTGGGATTGCACATGTTAATACTACTTACAACCTCTTCCAGCGAGAAGTATCTCTGATTGTTTTTCCCATGATAGTAAAAAGTGATGTTGGCAGTGGAATGATTCTGCATCTTTGGCACATAAATCCCAATCTGGTCCGGCGGGGCTTTATGGATTCTCAAAATCGTGATGTAGACAGCATTATGAGAATTGTGGACATTTGCCAAGAGCTTAAGATTCTATCTCCAGTGGTGGAAATTATTCCCTCTTATTATAGTATAAGGCTAGCAGCTGTTGCTTCAAGAAAAGAAATTCTTGACCTTGAGAAGTGGTTGAGTGACAACTTAACTACATACAAAGATGCCTTCTTTGAGGAGTGCCTGAAGTTCTTGAAGGAAGTCCAAGCCGGCAGATCACAAAATCTATCTGGCCAATCGTTTCATCAGTCTGGTGGCGTTCTGAATCTCTTTACTGAGACAACTGCTACGTTCTTGAAGGTTCTCAAATCTCATACCGACCTGGTTACCTCTGGACTAGTTTCTGAGGAGCTGGAGAAGTTGCATATATCTATTATAGATTCAAATCCAAGTCTTCAAAATAGCGGGACTACTGATTCATCTGCTTCAAATGGATTTCCGAAAGATGTTGAAGATGAAGCAAACAATATCTTCCAAGATATGTTTCATGATAAGATACCTGTCCCTAATGTGGTGCAAAGGCTAATCCGATTCAAGGAATCTTCTGTGAAGAGGGATAACTTGATTTTTGAATGCATGATTGCAAACTTGTTTGATGAGTATAAGTTTTATCCAAGGTATCCAGAAATGCAACTCAAAATTGCTGGAGTTGTCTTTGGTTCTGCAATCAAATATCATCTTGTGACGCATCTCTCTCTCGGAATAGCGCTTCGATATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCTAAAATGTTTATGTTTGGAAGTTTGGCACTAGAGCAATTTGTGGATCGTCTTATTGAGTGGCCCCAGTACTGCAATCACATTTTGCAAATTTCCCATTTACGCAGCACACATTCCGAAATTGTTGCTTTCATCGAACAGGCTCTTGCTAGGATATCCTCTGGTCACACAGATGTAGATGGGACAAGCCACACTTCTGTTATCAGTAACCATAGTTCTGCACAGGCTGCATTAGGTCATGCAGAGCTCAGTGGATCTAGCATGATACAACCCGGACAGCAGCATTTGTCACTGCAGCTTCAACAGAGACGTGAAAATCCTTTGGATGATCGTCACAAGCCCCCTGTTGGTTCATCTACTGATATGAGACCACCATTAGGTTCTCTAGGGCAATCTCCAGTGATTACACCGGCTGATAATTCTAGTCCCATTAAGATACCAAGCACAGTCAGTGCCTCGCCAATGTTATCTTCTTCTCCTGGTTTTGTCCGTCCGTCCCGTGGAACTACTTCTACCAGGTTTGGATCTGCCTTGAATATTGAGACTTTGGTCGCTGCTGCAGAGAAAAGAGAAACTCCAATAGAGGCTCCAGGGTCAGAGGTCCAGGACAAAATATCATTCATAATTAATAATATCTCGTCTAGTAATTTTGAAGCCAAAGCAAAAGAGCTCACTGAAATTTTGAAAGAGCAGTACTATCCATGGTTTGCACAGTATATGGTAATGAAAAGAGCTAGCATTGAGCCAAATTTCCATGACATGTACCTGAAATTCCTGGATAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTGTCCAGGCAACATATGAAAATTGCAAGGTGCTTTTAGGATCAGAACTTATAAAGTCAAGTTCAGAAGAGCGCTCTTTGCTTAAAAATCTTGGGAGCTGGCTCGGAAAGTTGACAATTGGACGAAATCAGGTTTTGAGGGCTCGTGAAATAGATCCAAAATCTTTGATTATAGAGGCATATGAGAAGGGGCTGATGATTGCTGTTATTCCATTTACTTCAAAGGTCCTTGAACCATGCCAAAACAGTCTTGCATATCAACCCCCTAATCCTTGGACCATGGGCATTTTAGGATTGCTTGCTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATACAAAAATCTTGGTGTTGATATGAAGGATGTCACACCAACTTCTCTCCTGAAGGATCGTAAAAGAGAAATTGAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGGGCATCTCAATCACAAATTATTACCGAGAAGTCACCCCCCCTAGTTCCTCCTGTGAACCAAGTAGAGCTACCACTTGAAGTCACCAATCCATCCAATAGCGGGGCTCATCCACATATCATGTCTCAGTATGCTGGCTCACATCATATTTCCACGGGAACATTGATGGATGATGAGAAAATACCACCCTTGGGCTTGTCTGACCAACTACCTTCTGCTCAAGGACTGTTGCAAGCAAATACTACCCCAGCACCATTCCAGCTCCCACCGCAGATTCAAAGTATTGGAACTCATGTTATTATAAATCCAAAGCTCAATCATTTGGGGTTACAGATGCATTTTCAACGAGCGGTACCGATTGCAATGGACAGAGCCATCAAAGACATAGTGACCAGTATTGTGAAGCGTAGTGTTTCCATAGCAACCCAAACAACAAAGGAACTTGTTTTAAAGGATTATGCTATGGAATCAGAGGAGAAACGTATTAAAAATGCGGCACACTTGATGGTTGCTAGTCTAGCTGGGAGTTTGGCTCATGTGACATGCAAAGAACCTTTACGGGCATCAATATCAGGTCAACTGAGGACTTCAGTTCAGAGTTTAAGTATTGCAAATGACATTTTGGAACAAGCTGTGCAGCTTGTGACCAATGATAATCTAGATCTTGGTTGTGCAGTCATTGAACATGCCGCTACGGACAAGGCAATAAACACCATTGATACAGAGATTAGTCAACAACTTTCATTGCGAAAGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATACAAACTTGTATCCACAAGGTTCGATGGGTGGGGTTCCAGAGCCCCTTCGCCCCAAACCTGGTCAGTTGTCCCTGTCACAACAGCGTGTCTATGAGGACTTTGTTCGGCTTCCTTGGCAAAACCAGTCTAGCCAGAGCTCACATTCAATATCTGCTGGTAATGCTGTTCAATCTGCTAATAGTGGTCTCTCTAGCACCAGTGGTCCTGCATCAGGACAGATAAACCCTGGTTACTCTCTAAACACAGGATATGAGGGGGTCTCTCGACCGATAGATGATATGCCAGAATCAAATTTTACTCCACATTATAGTGCTTCCTCAATTCACATTAGAGCAGCCGGAAATGTTTCTCAGCATAGTAGGGAGAACGACTCTGTTGCCTCATTTCCTTCAGCTGCTTCCACCCCTGAGTTGAACACAGTGGATTCTTCAGATGCTGTGAAAGAACCTGGAGCTTCTTCACTGCCACTGGTTTCATCAGGTGCTGTGGATCGCATTGGAAGTAGTTTCTTGGAACCGTCTCTCACTACAAGGGATGCTCTGGATAAATACCAAATTGTTGCACAGAAGTTGGAAGCTTTGGTTAACAATGATTTGAGGGAAGCAGAAATACAGGGAGTCATTTCTGAGGTACCTGAGATCATACTCAGATGTGTTAGTCGAGATGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTATATGACAATGCTTCAAACAGCGTTCATGTCTGTGCTTATCTTGCAATCCTGACTGCCATCCGTGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGTTGGGTAATTTACTCGGACGAAGAAAGGAAATATAATAAAGATATTACTGTTGGTCTCATCCGCAGTGAACTGCTAAATCTAACCGAGTACAATGTTCATATGGCAAAACTTATTGACGGGGGAAGAAATAAGGCTGCTACAGAGTTTTCAATCTCTCTTCTTCAAACCCTGGTCATCGAGGAACCAAAAGTTATTTCAGAACTTCACAATCTTATTGAGGCTTTGGCAAAGCTTGCTACAAAGCCTGGATACCCTGAATCGTTACAACAAGTTATGGAGATGATCAAGAATCCTGCTGCTCTATCTGCTAGTAATTCTGGAAAGGAGGATAAGGTGAAGCAGTTAAGAGATAATAAGGCTCCTGGTCTGCTAGTTGTAAACAGGGTAGAGTCTGCTGAACCTGATTCTGCTGGATTCCGTGACCAGGTTTCTTTGTTGTTTGCTGAATGGTATAAGATATGTGAACATCCCAGTGCCAATGATACAGCTCCTGCCCACTTCATCGTACAGTTGCACCAGAGGGGGCTGCTTAAGGGGGATGATATGACAGATCGCTTTTTCAGTCTGTTGATGGAAATTGCGGTTGCACATTGCTTATCCACTGAGGGGTTTAATTCAGGGGCACTGCAATCTCCTCAACAGATGCCGACAATGTCATTTCTTACAATTGATATTTACGCAAAGCTTGTCTTATCAATCTTGAAGGGATCAAGCAAACTTCTTCTTCTCTCCAAGATTCTGGCAGTTACTGTCAGATTCATTGTAAAAGATGCAGAGGAGAAGAAGGTTTCATTTAATCCAAGACCATTTTTCAGATTGTTCATCAATTGGCTTTTGGATCTTGGCTCACTTGAGCCTGTTACTGATGGGGCAAATCTCCAGATTTTGACTGCTTTTGCCAATGCATTTCATGCTCTACAGCCACTCAAAGTTCCTGGATTCAGTTTTGCCTGGCTGGAGTTGGTTAGTCATAGGAGCTTTATGCCTAAAATGCTGACTGGTAATGGTCAAAAAGGTTGGCTTTATATCCAAAGGTTGCTTGTAGATCTGTTCCAATTTATGGAGCCTTTTTTGAGGCACGCCGAACTAGGAGACCCGGTCCGTGTTCTCTATAAAGGTACACTTAGGGTGCTCTTGGTGCTACTTCACGATTTCCCAGAGTTCCTATGTGACTATCACTTTACCTTCTGTGATGTCATCCCTCCAAGTTGCATTCAGATGCGAAATATCATCCTAAGTGCATTTCCACGTAGTATGAGACTGCCAGATCCTTCAACTCCAAATTTAAAGATTGATTTGCTTCAAGAAATAACTCAATCCCCTCGCATTCTTTCTGAGGTTGATGCAGCACTGAAAGCAAAGCAGATGAAGGCTGACATAGATGAATACCTTAAGACGGAACAGGGTATTCCATTTTTATCTGAATTAAAAGAAAAGCTACTCCTCTCACCCAATGAAGCTGCCGCTGCCGGCACTCGTTACAATGTGCCATTGATCAACTCCCTTGTACTGTATGTCGGAATGCAGGCAATTCTGGATATTGAGGTACGAAATCAACATGCACAATCAATAACAAATGCACTCGATCTATATTCTGCTACAAATTCTTCTACAAATGCTTCCTTGGAGATTTTCAAGGCACTAATCGTTGACTTGGACACCGAAGGACGATACCTTTTCCTAAATGCTGTTGCTAACCAACTACGTTATCCCAATACTCACACACACTACTTTTCGTTCGTCATCCTTTATTTGTTTGCGGAATTAAACCAGGAAATTATCCAAGAACAAATTACAAGAGTCTTGCTAGAACGCCTCATTGTAAACCGACCTCATCCCTGGGGCCTCCTCATTACTTTCATTGAGTTGATCAAGAATCTAAGGTATAATTTCTGGAACCGGTCTTTCATAAGATGCGCACCGGAGATTGAAAAACTTTTTGAATCAGTCTCAAGATCTTGTGGAGGTCCAAAACCAGTCGATGAGAGTATGGTTTCGGGTTGGGTCTGA 7209 0.4203 MTLGSSRTMAVFSSSASNQIRFLLNSLNQLNFDSVFHQLSQFAEFGTVGCILLLQTCLDHFNYVRRDRKDMQHEPILVAVVKYLLNKPNFSTVFSESMKNVEINESFLESFCSGLQLSLLEKIAISLALSDSENPDARLCGKNFCMAQIEELCANPGSLSCHERIHSVIMFLKQSECLSGHVDSFMQILSLVQFKDTPPFVLTPLLPDEMHGADFLRWNMEFNECEENDFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEVLSLFLPLTDNMLSKLLGAIAHTHAGLEDNQNTFLTFGAALGYDNLSELPPLNSWNIDVLIDTVKNIAPQTNWVRVIENLDHEGFYLPSEEAFSFLMSVYKHACKEPFPLHAVCGSVWKNTEGQLSFLKYAVSAPPEMFTFAHSTRQLAYVDAINGHKFQNGHANHAWLCIDLLDVLCQLAEKGHASVVWSILDYPLKHCPEILLLGIAHVNTTYNLFQREVSLIVFPMIVKSDVGSGMILHLWHINPNLVRRGFMDSQNRDVDSIMRIVDICQELKILSPVVEIIPSYYSIRLAAVASRKEILDLEKWLSDNLTTYKDAFFEECLKFLKEVQAGRSQNLSGQSFHQSGGVLNLFTETTATFLKVLKSHTDLVTSGLVSEELEKLHISIIDSNPSLQNSGTTDSSASNGFPKDVEDEANNIFQDMFHDKIPVPNVVQRLIRFKESSVKRDNLIFECMIANLFDEYKFYPRYPEMQLKIAGVVFGSAIKYHLVTHLSLGIALRYVLDALRKPADSKMFMFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHTDVDGTSHTSVISNHSSAQAALGHAELSGSSMIQPGQQHLSLQLQQRRENPLDDRHKPPVGSSTDMRPPLGSLGQSPVITPADNSSPIKIPSTVSASPMLSSSPGFVRPSRGTTSTRFGSALNIETLVAAAEKRETPIEAPGSEVQDKISFIINNISSSNFEAKAKELTEILKEQYYPWFAQYMVMKRASIEPNFHDMYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLYKNLGVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGASQSQIITEKSPPLVPPVNQVELPLEVTNPSNSGAHPHIMSQYAGSHHISTGTLMDDEKIPPLGLSDQLPSAQGLLQANTTPAPFQLPPQIQSIGTHVIINPKLNHLGLQMHFQRAVPIAMDRAIKDIVTSIVKRSVSIATQTTKELVLKDYAMESEEKRIKNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSVQSLSIANDILEQAVQLVTNDNLDLGCAVIEHAATDKAINTIDTEISQQLSLRKKHREGMGSTFFDTNLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSISAGNAVQSANSGLSSTSGPASGQINPGYSLNTGYEGVSRPIDDMPESNFTPHYSASSIHIRAAGNVSQHSRENDSVASFPSAASTPELNTVDSSDAVKEPGASSLPLVSSGAVDRIGSSFLEPSLTTRDALDKYQIVAQKLEALVNNDLREAEIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNSVHVCAYLAILTAIRDVCKLAVKELTSWVIYSDEERKYNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVISELHNLIEALAKLATKPGYPESLQQVMEMIKNPAALSASNSGKEDKVKQLRDNKAPGLLVVNRVESAEPDSAGFRDQVSLLFAEWYKICEHPSANDTAPAHFIVQLHQRGLLKGDDMTDRFFSLLMEIAVAHCLSTEGFNSGALQSPQQMPTMSFLTIDIYAKLVLSILKGSSKLLLLSKILAVTVRFIVKDAEEKKVSFNPRPFFRLFINWLLDLGSLEPVTDGANLQILTAFANAFHALQPLKVPGFSFAWLELVSHRSFMPKMLTGNGQKGWLYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADIDEYLKTEQGIPFLSELKEKLLLSPNEAAAAGTRYNVPLINSLVLYVGMQAILDIEVRNQHAQSITNALDLYSATNSSTNASLEIFKALIVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFVILYLFAELNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNLRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWV 2402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00026 2402 FunFam CCR4-NOT transcription complex subunit 1 2151 2382 - -
Trre15g00026 2402 FunFam Ccr4-Not transcription complex subunit 943 1191 - -
Trre15g00026 2402 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 37 2391 IPR040398 GO:0017148|GO:0030015
Trre15g00026 2402 Pfam CCR4-Not complex component, Not1 2012 2383 IPR007196 -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 1508 1546 - -
Trre15g00026 2402 FunFam Transcription regulator 663 831 - -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 1461 1487 - -
Trre15g00026 2402 Gene3D - 2155 2388 - -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 1579 1618 - -
Trre15g00026 2402 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 970 1190 IPR032191 -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 1579 1606 - -
Trre15g00026 2402 Gene3D - 942 1192 - -
Trre15g00026 2402 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1313 1455 IPR024557 -
Trre15g00026 2402 CDD NOT1_connector 1638 1829 - -
Trre15g00026 2402 Gene3D - 661 830 IPR038535 -
Trre15g00026 2402 FunFam Transcription regulator 1861 2154 - -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 863 946 - -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 1508 1566 - -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 909 946 - -
Trre15g00026 2402 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 488 630 IPR032194 -
Trre15g00026 2402 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 658 827 IPR032193 -
Trre15g00026 2402 Gene3D - 1861 2154 - -
Trre15g00026 2402 MobiDBLite consensus disorder prediction 863 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00026 Trre-Chr15 221262 242563 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00026 K12604 - gmx:100783935 3932.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00026 15 221262 242563 Trre15g00026 15 221262 242563 ECH