Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00007 ATGACTAGGTTGAGGAAATTGCAAAAAGAGGAGGGACAAAGGAGGAGTCCACGTATATCTTGCATGATGCAGGGTCCTCCTGCACTTCGTACTAGGGACAAAAAGTTAAGACTCACAGCTTCACCAAATCAGGGTGTGAAACGTGAAGAAGATATTAAAAAGAAAAATGTTAGTGATCAACCATCAAAATCACCATCAACAACTCTTTTGCCGGAGAAACAAATACTTGAACTTGTCCTCGACACTTTACAAAGGAGAGACACATATGAAATATTTGCTGAACCGGTTAATCCAAATGAGGTTGAGAATTATTATGCAATCATCAAGGAGCCGATGGATTTTGGCACAATGAGGGCTAAACTACATGAGGGGATGTATAAGACTCTACAACAATTTGAGCATGATGTTTTTTTAATATTCAACAATGCCATGAATTTTAATTCTTCAGGTACCGTATACTTCAGGCAGGCTCGGGTTATAAGTGAGTTAGCCAAGAAAGTTTTTGATGTATTAAGAATCAATCCGGACAAGTTTGAAATAGAGTTCTCAGAAACAAGGCAGCTACAAGTGGGTCGAAGAAACCAAAGAGATCTTAGCGATTCAGCACACATTAAATCAAATAAAACAATAATTGGTGTGCCCTCAAATAATGTATCATGTTCTTCTCAAGGTACAAGAAGCCGGAAAAGCATTAAAACAAATTTTCATGGTTGTTCTGACACCTCTAAGCTTAATCATGCTAGAGATGTAGAGGTTCATACAGGTATCGAAGACAATCGCAGATGTAAATCTATTGAATTTGATAGGAATTCTACTTATAGACAATTTACCCGCGACAAAGATGTGCCAATACTCTCAACAATATATGATAAAGTAAAACTACTTGAGCATGTTAATCAACAAGATATTGGCTACAAAGAGAGCTTGATGTTGTTTGTTAAGGATTTAGGACCTACTGCCCAAAATATAGCTAAAAGGAAACTACTTGGATGTGAAATTCGTACTGCATCATCTGCTTTTGTACCTGCCTCTGTGTTAATATCTCAAAATCCCATAAATAAAATGAGAAGCTCTAGGGGGAAAACTAATCTGAAGATTGATGATGGTGATGGAGAAAAGGTTGAAGTGTCATTGAATGCTGAAAGAGAGATGGGAAATACTACTACTACTGCTACTCATGGAAGCCACACGGGGGGGTCCTTATGGTCTAAAGAAACCGGCAACAAGTCTACTAGGACGATGATGATATTGGACAATTCCTCCAAATTAGTTAATCAAGAACTGTTGATTCAAGACGGATGTCGAATGAATCATGTGATGGAATCAAGGTTAGAAAACAATTACTACAATTTTCAACCCCGACTACCCTGGGTCTTAGTAAGTAATAATGATGTTTCATATTTCAATCATGATCAAGATAAGCAAAAATCATTTTCAGAGTGTGTAATGGGTGAACATGAAAATCCACAAGCACAATGTTCAACAAATAATGGGACTAGTTGCTCATTTAAAGCCATGAAAATTTTACAATCAAACCAAACTGTGCAATTGCCTTCCAATTTTGTTTTCAATCTTCCATACTTGAAGACACGTCTTGACCAGATAGATTCCTCCTCAGAACAATACAAGCTCTCATGA 1638 0.3718 MTRLRKLQKEEGQRRSPRISCMMQGPPALRTRDKKLRLTASPNQGVKREEDIKKKNVSDQPSKSPSTTLLPEKQILELVLDTLQRRDTYEIFAEPVNPNEVENYYAIIKEPMDFGTMRAKLHEGMYKTLQQFEHDVFLIFNNAMNFNSSGTVYFRQARVISELAKKVFDVLRINPDKFEIEFSETRQLQVGRRNQRDLSDSAHIKSNKTIIGVPSNNVSCSSQGTRSRKSIKTNFHGCSDTSKLNHARDVEVHTGIEDNRRCKSIEFDRNSTYRQFTRDKDVPILSTIYDKVKLLEHVNQQDIGYKESLMLFVKDLGPTAQNIAKRKLLGCEIRTASSAFVPASVLISQNPINKMRSSRGKTNLKIDDGDGEKVEVSLNAEREMGNTTTTATHGSHTGGSLWSKETGNKSTRTMMILDNSSKLVNQELLIQDGCRMNHVMESRLENNYYNFQPRLPWVLVSNNDVSYFNHDQDKQKSFSECVMGEHENPQAQCSTNNGTSCSFKAMKILQSNQTVQLPSNFVFNLPYLKTRLDQIDSSSEQYKLS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00007 545 SUPERFAMILY Bromodomain 61 170 IPR036427 GO:0005515
Trre15g00007 545 MobiDBLite consensus disorder prediction 1 68 - -
Trre15g00007 545 PRINTS Bromodomain signature 117 135 IPR001487 GO:0005515
Trre15g00007 545 PRINTS Bromodomain signature 135 154 IPR001487 GO:0005515
Trre15g00007 545 PRINTS Bromodomain signature 101 117 IPR001487 GO:0005515
Trre15g00007 545 Pfam Bromodomain 79 158 IPR001487 GO:0005515
Trre15g00007 545 MobiDBLite consensus disorder prediction 1 16 - -
Trre15g00007 545 ProSiteProfiles Bromodomain profile. 84 154 IPR001487 GO:0005515
Trre15g00007 545 Gene3D - 64 192 IPR036427 GO:0005515
Trre15g00007 545 SMART bromo_6 65 173 IPR001487 GO:0005515
Trre15g00007 545 MobiDBLite consensus disorder prediction 44 58 - -
Trre15g00007 545 CDD Bromodomain 72 168 - -
Trre15g00007 545 PANTHER BROMODOMAIN CONTAINING PROTEIN 47 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00007 Trre-Chr15 136594 139296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00007 K22184 - tpra:123886957 879.011