Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00005 ATGGGTTTTCCGGTGGTTGTGGTTTGTCGACCCGGATCTATAGATTTTGTGTTGTTTGGAGATTTCGACCAATCCTCATCCGTCCCAGGAGAATTGATAGCAAGGATGAAAGTAGGATCTAGTAAAGGGACAAAAGTATGCCTGTCAGTGACAAGTGTTCTCATTGCAATTGTATTGCTGATAGTCATTCTAGCATTGACGGTGTTCAAAGCCAAGCATCCCGTTACCACTGTCGACTCATTGAAGCTACAAGACTTCAATCTGAACTTGGATATAGCAAAATTGAGGGTTGATTTGAACATAACCCTGGATGTGGATGTCTCAGTCAAGAATCCTAATAAGGTGGGGTTCAAATACTCAAACACCACTGCCCACCTCAATTACAGAGGCCAGCTGATAGGTGAAGTCCCTATTATTGCTGGAGAGATTTCTTCAGGTGAAACCAAGGGATTCAACCTCACTCTCACCATTATGGCCGACCGTTTGCTGTCCAATTCCCAGCTTTACTCTGATATCACATCTGGTACATTGCCCCTAAACACTTTCTTGATCATTTCTGGCAAAGTCAGTATCTTAGGCTTTATCAAAGTCCACGTAGTTTCCACCACATCCTGTGATTTTGCGGTTAATACTTCCAATAAAACAGTTGGCAACCAAGAGTGCCAATACAAAACAAAACTTTGA 684 0.4254 MGFPVVVVCRPGSIDFVLFGDFDQSSSVPGELIARMKVGSSKGTKVCLSVTSVLIAIVLLIVILALTVFKAKHPVTTVDSLKLQDFNLNLDIAKLRVDLNITLDVDVSVKNPNKVGFKYSNTTAHLNYRGQLIGEVPIIAGEISSGETKGFNLTLTIMADRLLSNSQLYSDITSGTLPLNTFLIISGKVSILGFIKVHVVSTTSCDFAVNTSNKTVGNQECQYKTKL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00005 227 SUPERFAMILY LEA14-like 62 165 - -
Trre15g00005 227 Gene3D - 62 209 - -
Trre15g00005 227 Pfam Late embryogenesis abundant protein 107 199 IPR004864 -
Trre15g00005 227 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 47 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00005 Trre-Chr15 127250 129769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00005 - - gmx:100811806 305.449